DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atms and atms

DIOPT Version :10

Sequence 1:NP_649493.1 Gene:atms / 40593 FlyBaseID:FBgn0010750 Length:538 Species:Drosophila melanogaster
Sequence 2:XP_321844.6 Gene:atms / 1281874 VectorBaseID:AGAMI1_005974 Length:567 Species:Anopheles gambiae


Alignment Length:565 Identity:382/565 - (67%)
Similarity:447/565 - (79%) Gaps:34/565 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPPTINNSAVNSAAEKRPQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPTSL 65
            |.||:.|.|  :.|:|||.||.||:||:|.||||.|.||||||||||:.|||::.||:|||||||
Mosquito     1 MAPTVQNGA--NGADKRPVRQQERRSELISRVKYCNTLPDIPFDLKFITYPFENDRFIQYNPTSL 63

  Fly    66 ERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLDPADEKLLEEETLTPTDSVRSRQHSRTVSWL 130
            |||::|:||||||||||:|||||:|||.|....|||||||||||:..||.||:||.:|:::||||
Mosquito    64 ERNYRYEVLTEHDLGVTIDLINRDLYQIDHSAQLDPADEKLLEEDIHTPQDSMRSSRHAKSVSWL 128

  Fly   131 RKSEYISTEQTRFQPQNLENIEAKVGYNVKKSLREETLYLDREAQIKAIEKTFSDTKSEITKHYS 195
            |||||||||||||.||.:|.:|||||:||||||||||||:|||||||||||||.|....||.|||
Mosquito   129 RKSEYISTEQTRFNPQTMEKVEAKVGFNVKKSLREETLYMDREAQIKAIEKTFEDNTKPITTHYS 193

  Fly   196 KPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEMSQAMIRGVMDESGEQFVAY 260
            ||.|.|||::|:||||.|||:|||||||||||||:|||||||:||||||||||||||||||||||
Mosquito   194 KPGVTPVEIMPVFPDFANWKYPCAQVIFDSDPAPSGKNVPAQIEEMSQAMIRGVMDESGEQFVAY 258

  Fly   261 FLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVKTKASKGYEENYFFVMRQDGIYYNEL 325
            ||||:.||||||.|.:|..||::|||||||:|||||||||:||||||||||:.|:|.||||||||
Mosquito   259 FLPTDDTLEKRRRDLVNETLYEDEEEYEYKMAREYNWNVKSKASKGYEENYYLVLRPDGIYYNEL 323

  Fly   326 ETRVRLNKRRVKVGQQPNNTKLVVKHRPLDSMEHRMQRYRERQLEVPGEEEEIVEEVREEEQMQI 390
            ||||||:|||.|..||.:|||||||||||::.|||||||||||||..|||::  |::.|||:.:.
Mosquito   324 ETRVRLSKRRQKNAQQQSNTKLVVKHRPLNASEHRMQRYRERQLEPAGEEDD--EDIEEEEEEEE 386

  Fly   391 IGETEKTSEDAAVGAQAASGAD--SPAQVARDRQ---SRSRSRT----RSGSS---SGSGSGSGS 443
            ..|..:.|:..|...:...|.|  ...:.:|||.   ||||||:    |||||   |.||:.|.|
Mosquito   387 DEEEAQASQTQAGEGKGGDGKDDEKAKRESRDRSRSGSRSRSRSQGSHRSGSSRSRSRSGTRSQS 451

  Fly   444 RASSRSKSGSRSGSGSRSRTNSPAGSQ-KSGSRSRSVSRSRSRSKS----------GSRSRSRSR 497
            |:.|||:|.|:|||.||||:.|.:||: :|||||||.:||||||.|          ||.||||||
Mosquito   452 RSVSRSRSRSKSGSRSRSRSRSGSGSRSRSGSRSRSPTRSRSRSVSRSRSRSGSQRGSASRSRSR 516

  Fly   498 SKSG------SRSRSGSRSGSGSRSPSRSRSGSPSGSGSSSGSAS 536
            |:||      |||||||||||.|.|.||||||:|.| ||.|||||
Mosquito   517 SRSGSRSRSRSRSRSGSRSGSRSGSGSRSRSGTPDG-GSRSGSAS 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atmsNP_649493.1 Paf1 29..413 CDD:397885 279/385 (72%)
atmsXP_321844.6 None

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