DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3f1 and stambpb

DIOPT Version :10

Sequence 1:NP_649489.1 Gene:eIF3f1 / 40587 FlyBaseID:FBgn0037270 Length:280 Species:Drosophila melanogaster
Sequence 2:XP_068079123.1 Gene:stambpb / 641572 ZFINID:ZDB-GENE-051127-31 Length:421 Species:Danio rerio


Alignment Length:138 Identity:35/138 - (25%)
Similarity:51/138 - (36%) Gaps:36/138 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 GTLLGSVDKGVVEVTN------C----FCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGW 88
            |.|.|::::....||:      |    :|      |.:.|.||....|.|:|        ..:||
Zfish   280 GILCGTLNRNAFTVTHVVVPKQCGGPDYC------DTENEEELFLVQDQYNL--------ITLGW 330

  Fly    89 WATGNDVTNH-SSV-IHEYYARECNNPVHLTVDTS---LQGGRMGLRAY------VCIQLGV-PG 141
            ..|....|.. ||| :|.:.:.:...|..:.:..|   .|.|...|..|      .|.|.|. |.
Zfish   331 IHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKFNQTGYFRLTDYGMEEISTCAQKGFHPH 395

  Fly   142 GKSGCMFT 149
            .|...:||
Zfish   396 PKDPPLFT 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3f1NP_649489.1 MPN_eIF3f 8..274 CDD:163695 35/138 (25%)
stambpbXP_068079123.1 USP8_dimer 14..118 CDD:462647
MPN_AMSH_like 251..421 CDD:163697 35/138 (25%)
Blue background indicates that the domain is not in the aligned region.

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