DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3f1 and eif-3.F

DIOPT Version :9

Sequence 1:NP_649489.1 Gene:eIF3f1 / 40587 FlyBaseID:FBgn0037270 Length:280 Species:Drosophila melanogaster
Sequence 2:NP_495988.1 Gene:eif-3.F / 174478 WormBaseID:WBGene00001229 Length:294 Species:Caenorhabditis elegans


Alignment Length:294 Identity:98/294 - (33%)
Similarity:161/294 - (54%) Gaps:26/294 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ALNLTVRVHPVVLFQVVDAFERR------NADSHRVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQ 61
            |.||||.|||.|...|||...||      |....:.:|||:|..:||.::|||||.:|..|.:|.
 Worm     2 ASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDD 66

  Fly    62 VEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYA---------RECNNPVHLT 117
            :|.:..:...|....:|.:.||..|||:.|.:|:|:...:.|:||.         ||....|.||
 Worm    67 LEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLT 131

  Fly   118 VDTSLQGG---RMGLRAYVCIQLGVPG--GKSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPA 177
            :||:..|.   ||.:|||:..:.|:||  |....:|.|:.|||.::..|...::|::|  .:...
 Worm   132 IDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEK--ALDSR 194

  Fly   178 HRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNA-VGRQLLDLI-HSVPHMTH 240
            .|..|:...|:  |:..::.::...|:.:|.||:||..:...|.:| :||||:|:: .|..:|..
 Worm   195 RREATLESGLE--QLETSTAQMIEWLERMLHYVEDVNKNGEKPGDAQIGRQLMDIVTASSNNMQP 257

  Fly   241 EQFTQMFNANVRNLLLVITLSQLIKTQLQLNEKL 274
            |:...:....:|:.::|..|::|.:||||::|:|
 Worm   258 EKLDTLVKNTLRDYVMVSYLAKLTQTQLQVHERL 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3f1NP_649489.1 MPN_eIF3f 8..274 CDD:163695 93/287 (32%)
eif-3.FNP_495988.1 MPN_eIF3f 7..291 CDD:163695 93/287 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159460
Domainoid 1 1.000 87 1.000 Domainoid score I5093
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2783
Inparanoid 1 1.050 152 1.000 Inparanoid score I2947
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54712
OrthoDB 1 1.010 - - D1038775at2759
OrthoFinder 1 1.000 - - FOG0004972
OrthoInspector 1 1.000 - - otm14346
orthoMCL 1 0.900 - - OOG6_103242
Panther 1 1.100 - - LDO PTHR10540
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R381
SonicParanoid 1 1.000 - - X3506
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

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