DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment eIF3f1 and Stambp

DIOPT Version :9

Sequence 1:	NP_649489.1	Gene:	eIF3f1 / 40587	FlyBaseID:	FBgn0037270	Length:	280	Species:	Drosophila melanogaster
Sequence 2:	NP_612540.1	Gene:	Stambp / 171565	RGDID:	619963	Length:	424	Species:	Rattus norvegicus

Alignment Length:	118	Identity:	27/118 - (22%)
Similarity:	43/118 - (36%)	Gaps:	42/118 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly   159 EPETFGLKLLQKTVGVSPAHRPKTVP----PMLDLA--------QISEASTKL---------QSL 202
            |.|...||::|:...|.|......:|    |.:|:|        |.|:.:|.|         :||
  Rat   173 ELEKERLKIVQEFGKVDPGPCGPLLPDLEKPCVDVAPSSPFSPTQTSDCNTTLRPAKPPVVDRSL 237

  Fly   203 LDLILKYVDDV-----IAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNAN 250
            ....|..:::|     :.|.|.|.|..                .:|.|:.:||
  Rat   238 KPGALSVIENVPTIEGLRHIVVPRNLC----------------SEFLQLASAN 274

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
eIF3f1	NP_649489.1	MPN_eIF3f	8..274	CDD:163695	27/118 (23%)
Stambp	NP_612540.1	Interaction with CHMP3. /evidence=ECO:0000250	1..127
		USP8_dimer	8..115	CDD:401063
		Interaction with STAM1. /evidence=ECO:0000250	227..231		0/3 (0%)
		MPN_AMSH_like	254..424	CDD:163697	8/37 (22%)
		JAMM motif. /evidence=ECO:0000255\|PROSITE-ProRule:PRU01182	335..348
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1310
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900