DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smash and prickle2a

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001071251.2 Gene:prickle2a / 777736 ZFINID:ZDB-GENE-061110-112 Length:869 Species:Danio rerio


Alignment Length:702 Identity:125/702 - (17%)
Similarity:188/702 - (26%) Gaps:298/702 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   749 QTSNSNENNQSTNQTSNSRNQKESSTAATSAANPVPPTTPGEQAEPYYQVPKATEPYYDAPKHLR 813
            |::.|.:::.|.:...:....|..:...||:.    |||....|||.                  
Zfish   323 QSARSRQSHHSASVGKDGSKGKGEAVRQTSSG----PTTLSGDAEPL------------------ 365

  Fly   814 PVPVYENVEIFYSGLEISQGSVGAPVGLMEPPKEKPPPPPTESPIPLDEGHDDELDGLGNSLGHN 878
                         .:::...||.:|.     |...|...||.:|        ........||...
Zfish   366 -------------AVQMDLLSVASPA-----PSRTPHRTPTRTP--------SRTSSRSPSLNRE 404

  Fly   879 TDTWSSDNTYETISNGTRRHLQGQPEPAQ------------PSP--PIKRMNSTKRIKKELRNKR 929
            ...|.  |..|..|..::|.....|.|.|            |||  |.|.::|.:...||.....
Zfish   405 QTVWV--NRDEPYSYESQRDSSTSPNPHQLRSQCSIRTAYPPSPNQPPKIVSSQEAWSKEPPGGN 467

  Fly   930 SSFLGIENDGDLDDMETYLELTVAPPPDMAQLLQEERRLEKQLYIKAGLCDSSDTGESRDSGVSE 994
            |.                      .||.||.|                          |....:|
Zfish   468 SK----------------------KPPVMAAL--------------------------RGHSFNE 484

  Fly   995 NHSRQSSEHYTNSSEENDTQSEATPPPLPPPPSTAQV--GEVIYQNESLLAAQ------------ 1045
            |......|                 |...||....|:  .||..:|...|..:            
Zfish   485 NWMHHGQE-----------------PEFHPPKLKTQMSFNEVSSRNSGFLDKRSISVQGFPREMR 532

  Fly  1046 -----------------TPLLQTVKGNSAESWTESATAAAAATQSLSEATATANAKMQSIEDKIR 1093
                             |||.||.:|::               .||:.:..|.|    |::...|
Zfish   533 PLLLRGRHQFRPNFGELTPLEQTPRGSA---------------DSLALSYTTGN----SLDGTSR 578

  Fly  1094 EQGEMLRVERELLHFSQEELKRQRENLVLRENIARR--------ELQHGAKMLMSNNRRSLQDL- 1149
            .|....|       ||..:|.:..     ..|::.:        .:|..:...:|:..|.|.|: 
Zfish   579 RQEHFSR-------FSMPDLSKDS-----GVNVSEKGTVGTLNSSVQFRSTESLSSVPRPLADIG 631

  Fly  1150 ---------------HHGLGIGN------GMLSAFQPPQHHQVQMPPPHPQQIYA-NVPQQQQQM 1192
                           ..||...:      |:..:....|....|...|.|::..| |.|:||:|.
Zfish   632 MPVRLRYPPPLYWDSPRGLSFEDPVKGRIGLAGSMSCMQDGNAQAMTPRPRRAQAQNSPRQQRQR 696

  Fly  1193 VLH---AYHQMDTDY--RKSMSDLNEFSNCLILPPTP---PTKPLR----------AMQLNANGH 1239
            ..|   .:......|  |:|.||     |.|.|....   |..|:.          :.:|:.|..
Zfish   697 QRHHRKNHKSQKYQYRSRRSRSD-----NALHLATEDQSFPGDPIHRFHNDFERPSSSRLSHNLF 756

  Fly  1240 GLEPDYAVSTRQ---------------RQPPAPYGGSLVKIAGAPMPPR---------------- 1273
            |....|    ||               :.|..|..|..:...|..:...                
Zfish   757 GANYGY----RQQFFRPCPRTTSDLTLQDPGGPQIGQYMGRYGEAVEDEDQFCSTCSSSSEASDD 817

  Fly  1274 ---LPGQGY--PIQ-------------APTAPAYHHQSAQNLSNMSRNTLLA 1307
               |||:|.  |:|             :||....|.|........|:|.:::
Zfish   818 DAYLPGEGIPRPVQLRYFDNEELRHRYSPTLVGGHTQLHTRKRRKSKNCIIS 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823
prickle2aNP_001071251.2 PET_Prickle 22..118 CDD:193602
LIM1_Prickle 126..184 CDD:188799
LIM2_Prickle 189..244 CDD:188802
LIM3_Prickle 249..307 CDD:188804
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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