DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smash and zyx

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_005157983.1 Gene:zyx / 564246 ZFINID:ZDB-GENE-070928-18 Length:608 Species:Danio rerio


Alignment Length:450 Identity:92/450 - (20%)
Similarity:142/450 - (31%) Gaps:155/450 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1165 PPQHHQVQMPPPHPQQIYANVPQQQQQMVLHAYHQMDTDYRKSMSDLNEFSNCLILPPTPPTKPL 1229
            ||....:.:||| |::: .:||                            |.|  .||.||..| 
Zfish   112 PPVAEDLHLPPP-PEEL-TSVP----------------------------SAC--FPPPPPPPP- 143

  Fly  1230 RAMQLNANGHGLEPDYAVSTRQRQPPAPYG---GSLVKI-----AGAPMPPRLPGQ--------- 1277
               .:..||.|:.     |.|..:....:.   |||..:     ...|..|:||.|         
Zfish   144 ---PVPENGAGIN-----SQRLFEKQTSFDKQLGSLTDMLSEMETSGPFNPKLPSQFSSAPAPKP 200

  Fly  1278 --GYPIQAPTAP-----------AYHHQS----AQNLSNMSRNTLLALSATPKP--KYADGWVQV 1323
              |.|   ||||           ...|.|    |:.|...:|...|:.::.|.|  ..|.|....
Zfish   201 APGPP---PTAPKPALSFLPPPELQDHPSPAPWAEELRARTRPANLSTASVPAPVQSVAKGPAVA 262

  Fly  1324 QQRKSYDSQQTSDAAWLAAQQQKRKSMPDYGGALYNNNHWLLQEAEQRRIEQLNRRSIPASKSMG 1388
            .:.....||..|:.|      .|..|....||| ...|| .::...|.....    ..||:....
Zfish   263 PKTNFPPSQLNSNLA------SKTVSPAPSGGA-RGFNH-TVKSPPQSTFPP----PPPAAPPAP 315

  Fly  1389 KPLPDSIIQTLTERVQSKGIGDRKRF----------DSNGNYSQVNGNNIYQQQQQQKNVTNGSS 1443
            .|.|.:|.:......::..||..:.|          .....:::..|||:            .|.
Zfish   316 IPPPANIPKPAFNHSETSPIGSHQSFAPPSPAAPKTSPVSTFNRPAGNNV------------PSK 368

  Fly  1444 INGNSS-------------------------QGQEK---VLSVSGKKKCSHCGDELGKLCYYVGC 1480
            ::|:.:                         |..:|   |::....:.|..||:.|.:      .
Zfish   369 VSGSGTGSGPGGAPLTMREVEELEKMTKDFIQHMDKHPPVITSPATEVCGKCGETLSR------S 427

  Fly  1481 RGAAMIIESLLLFYHINCFKCCVCHVQLGDGLNGTDVRVRNHKLHCQNCYSSDDGIKFSC 1540
            :.|...::.|   :|.:||.|..|...| .|:...|   |:....|:.||.|...:...|
Zfish   428 QPAVRAMDKL---FHSHCFCCVSCQRPL-QGMQFYD---RDGTPQCEECYMSSLSVCSRC 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823 10/35 (29%)
zyxXP_005157983.1 LIM 383..470 CDD:295319 19/99 (19%)
LIM 477..535 CDD:295319 0/3 (0%)
LIM3_Zyxin 537..603 CDD:188819
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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