DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smash and prickle1b

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001025269.1 Gene:prickle1b / 556148 ZFINID:ZDB-GENE-030131-2152 Length:872 Species:Danio rerio


Alignment Length:604 Identity:120/604 - (19%)
Similarity:190/604 - (31%) Gaps:174/604 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   749 QTSNSNENNQSTNQTSNSRNQKE-SSTAATSAANPVPPTTPGEQAEPY-YQVPKA--TEPYY--- 806
            |::.|.|:.:|.....:||..:: ..|...||.:....:..|:..|.. :|:.:.  ||..|   
Zfish   343 QSARSRESRRSIRMGKSSRPTEQCQQTKLYSATDYRTSSLCGDNTETMCHQLERINFTEDNYWRE 407

  Fly   807 ----DAPKHLRPVPVYENVEIFYSGLEISQGSVGA------------PVGLMEPPKEKPPPPPTE 855
                :||:.  .|..:...|.:.:.|.:..|..|.            .|...|..:.||....:.
Zfish   408 RDEQEAPED--SVEDWAEHEDYMTQLLLKFGDRGVIHAEDSRAAEPWMVKDTETNRTKPEIKMSG 470

  Fly   856 SPIPLDEGHDD-----ELDGLGNS-LGHNTDTWSSDNTYE-TISNGTRRHLQGQPEPAQPSPPIK 913
            ..:...:.|.|     ..||||:| .|.:....|:....| .:..||......:|.....     
Zfish   471 HNLASKKHHTDMYWAQSQDGLGDSAYGSHPGPASARKIQELEMDQGTVPGFWSEPRQWYE----- 530

  Fly   914 RMNSTKRIKKELRN------------KRSSFLGIENDGDLDDMETYLELTVAPPPDMAQLLQEER 966
              :|.:.|..|||.            ..|:..|...|||..|.:|...|        ..:..:||
Zfish   531 --DSLECITSELRKADHNIGDSMDSLALSNITGASVDGDSKDRQTIYSL--------QNMKDQER 585

  Fly   967 RLEKQLYI-KAGLCDSSDTGESRDSGVSENHSRQSSEHYTNSSEENDTQSEATPPPLPPPPSTAQ 1030
            .:|:...| ..|..:||....|.:|..|.|......|.....:.|:|.:....|.....|||...
Zfish   586 EIEECDNISNVGTLNSSMLHRSANSLRSLNSELGHEETLGQGAREDDEEDRIPPYFGAEPPSPLN 650

  Fly  1031 VGEVIYQNESLLAAQTPLLQTVKGNSAESWTESATAAAAATQSLSEATATANAKMQSIEDKIREQ 1095
            :               |:|:..|                     |::...:.::.....|.:.|:
Zfish   651 L---------------PVLRRTK---------------------SQSQPQSRSQQVKFSDDVLEK 679

  Fly  1096 G-----------EMLRVERELLHFSQEELKRQRENLVLRENIARRELQHGAKMLMSNNRRSLQDL 1149
            |           ...|..|...|..:|...........|.:..||.         |...||...|
Zfish   680 GYYGALGLRQPPMSERTRRRTFHIEEEAAAAAERRPANRHHHKRRH---------SRKTRSENAL 735

  Fly  1150 HHGLGIGNGMLSAFQPPQHHQVQMPPPHPQQIYANVPQQQQQMVL-------HAYHQMDTDY-RK 1206
            |         |.:....:.|.|      ||.|.:|:|:.:..::|       |.|.|..:|: ::
Zfish   736 H---------LPSKNRGKLHVV------PQVISSNMPEPRNGILLNHSAHSQHPYRQTTSDFPQQ 785

  Fly  1207 SMSDLNEF-------------SNC------------LILPPTPPTKPLRAMQLNANGHGLEPDYA 1246
            .|..|::|             |.|            .:..|.|  || |:...    |....||.
Zfish   786 GMVRLDQFQDFCDDDEEDDWCSTCSSSSSESEEEGFFLGQPIP--KP-RSQSF----HYYTEDYP 843

  Fly  1247 VSTRQRQPPAPYGGSLVKI 1265
            .......||.   ||..|:
Zfish   844 TRVTALTPPF---GSRTKL 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823
prickle1bNP_001025269.1 PET_Prickle 43..139 CDD:193602
LIM1_Prickle 146..204 CDD:188799
LIM2_Prickle 209..264 CDD:188802
LIM3_Prickle 269..327 CDD:188804
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.