DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and fhl2b

DIOPT Version :10

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001006028.2 Gene:fhl2b / 450007 ZFINID:ZDB-GENE-041010-121 Length:279 Species:Danio rerio


Alignment Length:104 Identity:26/104 - (25%)
Similarity:38/104 - (36%) Gaps:33/104 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1464 CSHCGDEL-GK------------LCYY-------------VGCRGAAMIIESLLLFYHINCFKCC 1502
            |.:|.:.| ||            .||.             :||....:..:.  ..:|.:||.|.
Zfish     7 CHYCKESLFGKKYVLRDENPYCVKCYESLYSNTCEECKKPIGCNSRDLSYKD--RHWHDDCFHCF 69

  Fly  1503 VCHVQLGDGLNGTDVRVRNHKLHCQNCYSSDDGIK-FSC 1540
            .||..|.|....|    ::.:|.|..|||::...| |.|
Zfish    70 KCHRSLVDKPFST----KDEQLLCTECYSNEYSSKCFEC 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 <47..153 CDD:464950
PAT1 <1159..>1335 CDD:401645
LIM <1494..1530 CDD:395333 11/35 (31%)
fhl2bNP_001006028.2 LIM <7..33 CDD:413332 6/25 (24%)
LIM 36..97 CDD:413332 16/66 (24%)
LIM 101..157 CDD:413332 2/4 (50%)
LIM3_Fhl2 162..218 CDD:188815
LIM4_FHL2 221..278 CDD:188817
Blue background indicates that the domain is not in the aligned region.

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