DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and fhl2a

DIOPT Version :10

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001003732.1 Gene:fhl2a / 445277 ZFINID:ZDB-GENE-040808-49 Length:279 Species:Danio rerio


Alignment Length:96 Identity:22/96 - (22%)
Similarity:34/96 - (35%) Gaps:32/96 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1464 CSHCGDEL-GK------------LCYY-------------VGCRGAAMIIESLLLFYHINCFKCC 1502
            |.:|.:.| ||            .||.             :||....:..:.  ..:|.:||.|.
Zfish     7 CHYCKESLFGKKYVLREDNPYCVKCYESLYSNTCEECKKPIGCNSRDLSYKD--RHWHEDCFHCF 69

  Fly  1503 VCHVQLGDGLNGTDVRVRNHKLHCQNCYSSD 1533
            .|...|.|....|    ::.:|.|..|||::
Zfish    70 QCKRSLVDKPFST----KDEQLLCTECYSNE 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 <47..153 CDD:464950
PAT1 <1159..>1335 CDD:401645
LIM <1494..1530 CDD:395333 10/35 (29%)
fhl2aNP_001003732.1 LIM <7..33 CDD:413332 6/25 (24%)
LIM1_FHL2 36..97 CDD:188806 15/67 (22%)
LIM2_FHL2 101..157 CDD:188810
LIM3_Fhl2 162..218 CDD:188815
LIM 221..278 CDD:413332
Blue background indicates that the domain is not in the aligned region.

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