DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and fhl1a

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001007288.1 Gene:fhl1a / 399646 ZFINID:ZDB-GENE-040206-1 Length:297 Species:Danio rerio


Alignment Length:85 Identity:24/85 - (28%)
Similarity:31/85 - (36%) Gaps:19/85 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1460 GKKKCSHCGDELG----KLCYYV---GCRGAAMIIESLLLFYHINCFKCCVCHVQL--------G 1509
            ||..|..|||..|    :.||.|   ||:.    :|.....:|..||.|..|...:        |
Zfish   102 GKIMCGKCGDRDGSPRCQGCYKVITPGCKN----VEYKHKVWHEECFTCFECKQPIRTQSFLTKG 162

  Fly  1510 DGLNGTDVRVRNHKLHCQNC 1529
            |.:..|....:....||..|
Zfish   163 DDMYCTPCHEKKFAKHCVRC 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823 11/44 (25%)
fhl1aNP_001007288.1 LIM <21..49 CDD:295319
LIM1_FHL1 56..110 CDD:188730 3/7 (43%)
LIM2_FHL1 118..175 CDD:188808 14/60 (23%)
LIM3_FHL1 179..231 CDD:188813 2/4 (50%)
LIM4_FHL1 234..297 CDD:188734
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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