DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and fhl1a

DIOPT Version :10

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_073777386.1 Gene:fhl1a / 399646 ZFINID:ZDB-GENE-040206-1 Length:322 Species:Danio rerio


Alignment Length:85 Identity:24/85 - (28%)
Similarity:31/85 - (36%) Gaps:19/85 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1460 GKKKCSHCGDELG----KLCYYV---GCRGAAMIIESLLLFYHINCFKCCVCHVQL--------G 1509
            ||..|..|||..|    :.||.|   ||:.    :|.....:|..||.|..|...:        |
Zfish   127 GKIMCGKCGDRDGSPRCQGCYKVITPGCKN----VEYKHKVWHEECFTCFECKQPIRTQSFLTKG 187

  Fly  1510 DGLNGTDVRVRNHKLHCQNC 1529
            |.:..|....:....||..|
Zfish   188 DDMYCTPCHEKKFAKHCVRC 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 <47..153 CDD:464950
PAT1 <1159..>1335 CDD:401645
LIM <1494..1530 CDD:395333 11/44 (25%)
fhl1aXP_073777386.1 None
Blue background indicates that the domain is not in the aligned region.

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