DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smash and Tes

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster


Alignment Length:689 Identity:139/689 - (20%)
Similarity:236/689 - (34%) Gaps:209/689 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   948 LELTVAPP---PDM----------AQL--------LQEERRLEKQL---YIKAGLCDSSDTGESR 988
            ::|...||   ||:          ||:        |:.:.:||.|:   .:.|.|||        
  Fly   110 VQLEWVPPNAAPDVVTDYMEKLGTAQIPVAGSDAALKRKMQLELQVPPHDLDAALCD-------- 166

  Fly   989 DSGVSENHSRQSSEHYTNSSEE--------------NDTQSEATPPPLPPPPSTAQVGEVIYQNE 1039
              |::|..:.|..::.....|:              |..|.|...|.|.|    .|..:..:|:.
  Fly   167 --GLTETEAIQLQQYVQKLREQCVGQGVVVRLGDRLNHAQVEHVAPALMP----TQEAQQTWQSL 225

  Fly  1040 SLLAAQTPLLQTVKGNSAESWTESATAAA------AATQSLSEATATANAKMQSIEDKIREQGEM 1098
            .|:......|..:..|...:...::.|:|      |.::.|.|:||           :..|.|.:
  Fly   226 GLMPVADDTLNELLANPKVAQALASPASAHPKLLVAFSEPLCESTA-----------QFEENGAL 279

  Fly  1099 LRVERE-LLHFSQEELKRQRENLVLRENIARRELQHGAKMLMSNNRRSLQDLHHGLG-------- 1154
            ....|| ||..|:..|.....:.::.:.:.  .:....|:.:|.:.:        ||        
  Fly   280 RAQTREKLLGISKPALLSLVTHGIVYDKVL--GILQEKKLNISRDPK--------LGPIAEFRKE 334

  Fly  1155 -IGNGMLSAF------QPPQHHQVQMPPPHPQQIYANVP---QQQQQMVLHAYHQMDTDYRK--- 1206
             :.|....|.      |||. ..::.||..|    .|.|   :...|:.:.|..:.||..|:   
  Fly   335 YVNNPQFRAEINTICPQPPM-TPIKSPPGTP----FNSPLPLKNPVQIRMGAQMRQDTPMRRVKF 394

  Fly  1207 -SMSDLNEFSNCLILPPTPPTK-PLRAMQLNANGHGLEPDYAVSTRQRQPPAPYGGSLVKIAGAP 1269
             .:|.:  ..:|.:...|...: |:.|..|.|     ||........|...||   |.|.|:..|
  Fly   395 GGVSTI--VYDCGLPANTDYDRDPVFAQILQA-----EPLKHAFQEARAGRAP---SSVVISNIP 449

  Fly  1270 MP----PRLPGQGYPIQAPTAPAYHHQSAQNLSNMSRNTLLALSATPKPKYADGWVQVQQRKSYD 1330
            .|    ..|.|..        ||...|    |.::..:..:..||.....|.|...    |..:|
  Fly   450 APVASLAELRGLN--------PATRAQ----LQSVGLDKNMLQSAVSNAPYYDRLF----RSLHD 498

  Fly  1331 SQQTSDAAWLAAQQQKRKSMPDYGGALYNNNHWLLQEAEQRRIEQLNR---------RSIPASK- 1385
            ...:.|...|.   |..|.:.|          |||.  :.:.::::::         :.|...| 
  Fly   499 KGISHDQCHLL---QPMKQVHD----------WLLD--DDQLLDEIDKVFADMANGCKDISYPKP 548

  Fly  1386 SMGKPLPDSIIQTLTERVQSK----GIGDRKRFDSNGNYSQVNG---NNIY-------QQQQQQK 1436
            |:|: ||.|  |:......||    |.|........|.::.:.|   .|:|       :|.||.:
  Fly   549 SLGE-LPTS--QSSDSGFHSKPPTPGYGSEDLTAGQGRFASIPGIEDMNMYPSCAGMPEQFQQLR 610

  Fly  1437 NVTNGSSINGNSSQGQEKVLSVSGKKKCSHCGD--ELGKLCYYVGCRGAAMIIESLLLFYHINCF 1499
                   ::|:.:.|:....::    .|:.|..  .:|::.......|..       :.:|..||
  Fly   611 -------LHGDEASGKNSTRTI----LCADCNQPIAMGEVAVKADRAGKE-------IAWHPGCF 657

  Fly  1500 KCCVCHVQLGDGLN---------GTDVRVRNHKLHCQNC 1529
            ||..|...|.|.:.         |.|:.:|.....|:.|
  Fly   658 KCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRAC 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823 13/45 (29%)
TesNP_611215.1 PET_testin 110..197 CDD:193604 19/96 (20%)
LIM1_Testin_like 627..684 CDD:188726 13/63 (21%)
LIM2_Testin_like 691..748 CDD:188727 2/6 (33%)
LIM 755..810 CDD:295319
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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