DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and scel

DIOPT Version :10

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_005168027.2 Gene:scel / 368684 ZFINID:ZDB-GENE-030616-15 Length:612 Species:Danio rerio


Alignment Length:563 Identity:84/563 - (14%)
Similarity:186/563 - (33%) Gaps:145/563 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   989 DSGVSENHSRQSSEHYTNSSEENDTQS--EATPPPLPPPPSTAQVGEVIYQNESLLAAQTPLLQT 1051
            |...:::.:|::.::.|...|:...:|  :....|..|..:|..:..  |..|.:|.|:|.....
Zfish   165 DRNPADSSTRRTGDYKTTRQEDITVKSSKDTVDGPSSPVKTTTSIKS--YTKEDVLPAKTTPYSV 227

  Fly  1052 VKGNSAESWTESATAAAAATQSLSEATATANAKMQSIEDKIREQGEMLRVERELLHFSQEELKRQ 1116
            ....|:|:.|.:::.....|:.....:.|....::|.:..|......::....:..:::|:    
Zfish   228 QSTKSSENLTPTSSIMTTNTKPEISDSKTEVVTVKSSKTVIDTPASPVKTTTSIKTYTKED---- 288

  Fly  1117 RENLVLRENIARRELQHGAKMLMSNNRRSLQDLHHGLGIGNGMLSAFQPPQHHQVQMPPPHPQQI 1181
                                :..:|.:|                              |..|.:.
Zfish   289 --------------------VTSTNTKR------------------------------PTSPVKT 303

  Fly  1182 YANVPQQQQQMVLHA------YHQMDTDYRKSMSDLNEFSNCLILPPTPPTKPLRAMQLNANGHG 1240
            ..::....::.|..|      .:...:||:..::.:....:.:.:|.:|                
Zfish   304 TTSIKTFTKEDVSPAKLTTTTTYTTKSDYKTEVATVKSSKDIIDIPASP---------------- 352

  Fly  1241 LEPDYAVSTRQRQ-----PPAPYGGSLVKIAGAPMPPRLPGQGYPIQAPTAPAYHHQSAQNLSNM 1300
            ::...::.|..::     ...||.....|          ..:.:....||..:......:.::..
Zfish   353 VKTTTSIKTYTKEDVTSPKTTPYSVRSTK----------SSKDFLYDTPTKTSISDYKTEVVTVN 407

  Fly  1301 SRNTLLALSATPKPKYADGWVQVQQRKSYDSQQTSDAAWLAAQQQKRKSMPDYGGALYNNNHWLL 1365
            |...::.:..:|........:     |||..:..|.....:...:..||..|   .||:.     
Zfish   408 SSKDIVDIPTSPVKTTTSYSI-----KSYTKEDVSPTKTTSDSIRSTKSSED---LLYDT----- 459

  Fly  1366 QEAEQRRIEQLNRRSIPASKSMGKPLPDSIIQTLTERVQSKGIG------DRKRF--DSNGNYSQ 1422
                          .||.|.......|||..:.|:   .||.:.      ||..:  |.:.:|::
Zfish   460 --------------LIPLSIKSTNSKPDSSREDLS---SSKTVRTVYSTIDRNEWSTDLSPSYTR 507

  Fly  1423 VNGNNIYQQQQQQKNVTNGSSINGNSSQGQEKVLSVSGKKKCSHCGDELGKLCYYVGCRGAAMII 1487
            .:.......:....::|:.::....||..::    |:.|..|::|...:     |.   ....|:
Zfish   508 TSYTESRPFEYMSDSLTSKTTTTVYSSPERK----VNAKDICTYCNQSM-----YT---DEKFIL 560

  Fly  1488 ESLLLFYHINCFKCCVCHVQLGDGLNGTDVRVRNHKLHCQNCY 1530
            :.:.:..|..||||.||:..||:...|..:.|....:||.:|:
Zfish   561 DDMNINCHARCFKCGVCNTSLGNLRAGDSLWVYQCAIHCASCF 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 <47..153 CDD:464950
PAT1 <1159..>1335 CDD:401645 19/186 (10%)
LIM <1494..1530 CDD:395333 13/35 (37%)
scelXP_005168027.2 None
Blue background indicates that the domain is not in the aligned region.

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