| Sequence 1: | NP_001246912.1 | Gene: | smash / 40583 | FlyBaseID: | FBgn0263346 | Length: | 1541 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001106208.1 | Gene: | Limd1 / 316101 | RGDID: | 1309830 | Length: | 663 | Species: | Rattus norvegicus |
| Alignment Length: | 542 | Identity: | 108/542 - (19%) |
|---|---|---|---|
| Similarity: | 174/542 - (32%) | Gaps: | 169/542 - (31%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 622 EFSINEALELALQAIDREATTKP------------MDKAQHPQKREQKEELGGKPEEKEPICEEQ 674
Fly 675 HDEESNEQGETHNEGGEMPNKTDKQMQGGREPI----YENVSSTISMHEVDNEQIATMTITTQTQ 735
Fly 736 ATRISHRRSIP--SQQTSNSNENNQSTNQTSNSRNQKESS-TAATSAANPVPPTTPGEQAEPYYQ 797
Fly 798 VPKATEPYYDAPKHLRPVPVYENVEIFYSGLEISQGSVGAPVGLMEPPKEKPPPPPTESPIPLDE 862
Fly 863 GHDDEL---DGLGNSLGHN----TDTWSSDNTYET--------ISNGTRRHLQGQPEPAQP---- 908
Fly 909 -SPPIKRMNSTKRIKKELRNKRSSFLGIENDG----DLDDMETYLE------LTVAPPPDMAQLL 962
Fly 963 QEERRLEKQLYIKAGLCDSSDTGESRDSGVSENHSRQSSEHYTNSSEENDTQSEATP-------- 1019
Fly 1020 -PPLPPPPSTAQVGEVIYQNESLLAAQTPLLQTVKGNSAESWTESATAAAAATQSLSEATATANA 1083
Fly 1084 KMQSIEDKIREQGEMLRVEREL 1105 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| smash | NP_001246912.1 | DUF4757 | 14..152 | CDD:292571 | |
| LIM | <1494..1530 | CDD:278823 | |||
| Limd1 | NP_001106208.1 | Mediates nuclear export. /evidence=ECO:0000250 | 54..128 | 21/108 (19%) | |
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 74..99 | 7/24 (29%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 117..158 | 11/40 (28%) | |||
| Interaction with EGLN1/PHD2. /evidence=ECO:0000250 | 180..251 | 15/84 (18%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 230..253 | 7/25 (28%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 267..297 | 9/38 (24%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 335..416 | 21/97 (22%) | |||
| Interaction with RB1. /evidence=ECO:0000250 | 391..429 | 10/69 (14%) | |||
| Necessary for nuclear localization. /evidence=ECO:0000250 | 459..663 | ||||
| LIM1_Ajuba_like | 459..512 | CDD:188738 | |||
| LIM2_Ajuba_like | 524..576 | CDD:188741 | |||
| LIM3_Ajuba_like | 584..645 | CDD:188822 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG1704 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.900 | |||||