DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and Prickle2

DIOPT Version :10

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_038963548.1 Gene:Prickle2 / 312563 RGDID:1306723 Length:939 Species:Rattus norvegicus


Alignment Length:343 Identity:71/343 - (20%)
Similarity:123/343 - (35%) Gaps:86/343 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1124 ENIARRELQHGAKMLMSNNR--RSLQDLHHGLGIGNGMLSAFQPPQHHQV-------QMPPPHPQ 1179
            :|...:|.:..||:..:..:  .::.:.|..|.:.:..|||...|...|:       |.|..:..
  Rat   419 QNARAKESRRSAKIGKNKGKTEETMLNQHSQLQVSSNRLSADVDPLSVQMDLLSLSSQTPSLNRD 483

  Fly  1180 QIYANVPQQQQQMVLHAYHQMDTDYRKSMSDLNEFSNCLILPPTPP----------------TKP 1228
            .|:     :.:....|..::|:.:  :|.|.|...|.|.|.....|                :.|
  Rat   484 PIW-----RSRDEPFHYGNKMEQN--QSQSPLQLLSQCNIRTSYSPGGQAAGAQPDMWAKHFSNP 541

  Fly  1229 LRAMQLNANGHGLEPDYAVSTRQRQPPAPYGGSLVKIAGAPMPPRLPGQGYPIQAPTAPAYHHQS 1293
            .|:..:...||                   |||.::        ......||.:..:..:|...|
  Rat   542 KRSSSMALKGH-------------------GGSFIQ--------ECREDYYPGRLMSQESYSDMS 579

  Fly  1294 AQNLSNMSRNTLLALSATPKPKY--------ADGWVQVQQ---RKSYDS-QQTSDAAWLAAQQQK 1346
            :|:.|. :|.::      |.|||        .:|.:..||   |:...| :.|.|..  ..:|..
  Rat   580 SQSFSE-TRGSI------PVPKYEEEEEEEEEEGGISTQQCRPRRPLSSLKYTEDMT--PTEQTP 635

  Fly  1347 RKSMPDYGGALYNNNHWLLQEAEQRRIEQLNRRSIP-ASKSMGKPLPDSI--IQTLTERVQSKGI 1408
            |.||....   .:|...|..|...:|.|.|:|.|:| .||..|..:.:.:  :.||...:|.:..
  Rat   636 RGSMESLA---LSNATGLSAEGGAKRQEHLSRFSMPDLSKDSGMNVSEKLSNMGTLNSSMQFRSA 697

  Fly  1409 GDRKRFDSNGNYSQVNGN 1426
            ...:...|...|.::.||
  Rat   698 ESVRSLLSAQQYQEMEGN 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 <47..153 CDD:464950
PAT1 <1159..>1335 CDD:401645 40/210 (19%)
LIM <1494..1530 CDD:395333
Prickle2XP_038963548.1 PET_Prickle 118..214 CDD:193602
LIM1_Prickle 222..280 CDD:188799
LIM2_Prickle 285..340 CDD:188802
LIM3_Prickle 345..403 CDD:188804
Blue background indicates that the domain is not in the aligned region.

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