Sequence 1: | NP_001246912.1 | Gene: | smash / 40583 | FlyBaseID: | FBgn0263346 | Length: | 1541 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_038888.2 | Gene: | Limd1 / 29806 | MGIID: | 1352502 | Length: | 668 | Species: | Mus musculus |
Alignment Length: | 467 | Identity: | 97/467 - (20%) |
---|---|---|---|
Similarity: | 160/467 - (34%) | Gaps: | 121/467 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 622 EFSINEALELALQAIDREATTKPMDKAQHPQKREQKEELGGKPEEKEPICEEQHDEESNEQGETH 686
Fly 687 NEGGEMPNKTDKQMQGGREPIYENVSSTISMHEVDNEQIATMTITTQTQATRISHRRSIPSQQ-- 749
Fly 750 TSNSNENNQSTNQTSNSRNQKESSTAATSAANPVPPT-------TPGEQAEPYYQVPKATEPYY- 806
Fly 807 DAPKHLRPVPVYENVEIFYSGLEISQGSVGAPVGLMEPPK---EKPPPPPTESPI----PLDEGH 864
Fly 865 DDELDGLGNSLGHN----TDTWSSDNTYET--------ISNGTRRHLQGQPEPAQPSPPIKRMNS 917
Fly 918 TKRIKKELRNKRSSFLGIENDG----DLDDMETYLE------LTVAPPPDMAQLLQEERRLEKQL 972
Fly 973 YIKAGLCDSSDTGESR---------DSGVSENHSRQSSEHYTNSSEENDTQSEATP--------- 1019
Fly 1020 PPLPPPPSTAQV 1031 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
smash | NP_001246912.1 | DUF4757 | 14..152 | CDD:292571 | |
LIM | <1494..1530 | CDD:278823 | |||
Limd1 | NP_038888.2 | Mediates nuclear export. /evidence=ECO:0000250 | 54..128 | 16/85 (19%) | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 74..160 | 19/96 (20%) | |||
Interaction with EGLN1/PHD2. /evidence=ECO:0000250 | 181..256 | 18/88 (20%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 239..258 | 6/21 (29%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 277..309 | 9/39 (23%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 340..414 | 19/90 (21%) | |||
Interaction with RB1. /evidence=ECO:0000250 | 396..434 | 6/24 (25%) | |||
Necessary for nuclear localization. /evidence=ECO:0000250 | 464..668 | ||||
LIM1_Ajuba_like | 464..517 | CDD:188738 | |||
LIM2_Ajuba_like | 529..581 | CDD:188741 | |||
LIM3_Ajuba_like | 589..650 | CDD:188822 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1704 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |