DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and Limd1

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_038888.2 Gene:Limd1 / 29806 MGIID:1352502 Length:668 Species:Mus musculus


Alignment Length:467 Identity:97/467 - (20%)
Similarity:160/467 - (34%) Gaps:121/467 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   622 EFSINEALELALQAIDREATTKPMDKAQHPQKREQKEELGGKPEEKEPICEEQHDEESNEQGETH 686
            :.::.||.:..|..:|:.|       ..:|:..|.:.....|..:   |..:|..::...|.|..
Mouse    17 DLNMYEASKDGLFRVDKGA-------GNNPEFEETRRVFATKMAK---IHLQQQQQQQLLQEEAL 71

  Fly   687 NEGGEMPNKTDKQMQGGREPIYENVSSTISMHEVDNEQIATMTITTQTQATRISHRRSIPSQQ-- 749
            ...|..|      :.||..   :..|..::........:|..|:......|..:.:.|.|||:  
Mouse    72 PRAGRSP------VNGGNR---QGASGKLAADGAAKPPLAVPTVAPGLATTTAAAQPSYPSQEQR 127

  Fly   750 TSNSNENNQSTNQTSNSRNQKESSTAATSAANPVPPT-------TPGEQAEPYYQVPKATEPYY- 806
            ...|....:..:|...||....||  ...|.:.:.|:       |.|:    ||.......|.: 
Mouse   128 IRPSAHGARPGSQNCGSREGPVSS--QRPALHGLSPSCEDPSCLTHGD----YYDNFSLASPQWG 186

  Fly   807 DAPKHLRPVPVYENVEIFYSGLEISQGSVGAPVGLMEPPK---EKPPPPPTESPI----PLDEGH 864
            |.|:....|           .|.:..|..|.|......||   :..|..|..|.:    ..:.|.
Mouse   187 DKPEGCPSV-----------SLGVGSGWPGCPGNDSTLPKSCGDHHPYQPQLSTVCSGRSFESGI 240

  Fly   865 DDELDGLGNSLGHN----TDTWSSDNTYET--------ISNGTRRHLQGQPEPAQPSPPIKRMNS 917
            ..:..|:|   ||:    |..||:.::...        :.|||    ..||:....|.|:...::
Mouse   241 SGQDGGIG---GHSSEKPTGLWSTASSQRVNLGFSSMGLENGT----SAQPKGTTVSAPMVPSSA 298

  Fly   918 TKRIKKELRNKRSSFLGIENDG----DLDDMETYLE------LTVAPPPDMAQLLQEERRLEKQL 972
            ::....    ||.|.||.|..|    .|.|.:.:|:      |:|:.|                |
Mouse   299 SQGACP----KRDSGLGYEASGRVFKPLVDTQPWLQDGPKSYLSVSAP----------------L 343

  Fly   973 YIKAGLCDSSDTGESR---------DSGVSENHSRQSSEHYTNSSEENDTQSEATP--------- 1019
            ...||. ||:..|.:.         :||.|...|..|:.|...|:....:..|::|         
Mouse   344 SSTAGK-DSTQPGMTTGLDPKFGCVESGTSPKPSPTSNVHPVMSTPSELSCKESSPSWSTDSSLE 407

  Fly  1020 PPLPPPPSTAQV 1031
            |.||..|:.::|
Mouse   408 PVLPGSPTPSRV 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823
Limd1NP_038888.2 Mediates nuclear export. /evidence=ECO:0000250 54..128 16/85 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..160 19/96 (20%)
Interaction with EGLN1/PHD2. /evidence=ECO:0000250 181..256 18/88 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..258 6/21 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 277..309 9/39 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 340..414 19/90 (21%)
Interaction with RB1. /evidence=ECO:0000250 396..434 6/24 (25%)
Necessary for nuclear localization. /evidence=ECO:0000250 464..668
LIM1_Ajuba_like 464..517 CDD:188738
LIM2_Ajuba_like 529..581 CDD:188741
LIM3_Ajuba_like 589..650 CDD:188822
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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