DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and Fhl5

DIOPT Version :10

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001013106.1 Gene:Fhl5 / 297954 RGDID:1307056 Length:284 Species:Rattus norvegicus


Alignment Length:78 Identity:24/78 - (30%)
Similarity:32/78 - (41%) Gaps:21/78 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1462 KKCSHCGDELGKLCYYVGCRGAAMIIESLLLF----YHINCFKCCVCHVQL-GDGLNGTDVRVRN 1521
            |||:.|...:      .|.|||..|     .|    :|..||.|..|.|.| |:|.     ..:|
  Rat   220 KKCAACTKPI------TGLRGAKFI-----CFQDRQWHSECFNCGKCSVSLVGEGF-----LTQN 268

  Fly  1522 HKLHCQNCYSSDD 1534
            .::.|:.|.|..|
  Rat   269 MEILCRKCGSGAD 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 <47..153 CDD:464950
PAT1 <1159..>1335 CDD:401645
LIM <1494..1530 CDD:395333 11/36 (31%)
Fhl5NP_001013106.1 LIM <6..34 CDD:413332
LIM1_FHL 37..95 CDD:188729
LIM2_FHL5 102..155 CDD:188812
LIM 163..214 CDD:413332
LIM4_FHL 222..277 CDD:188733 19/70 (27%)
Blue background indicates that the domain is not in the aligned region.

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