DRSC/TRiP Functional Genomics Resources

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Protein Alignment smash and Fhl5

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001013106.1 Gene:Fhl5 / 297954 RGDID:1307056 Length:284 Species:Rattus norvegicus


Alignment Length:78 Identity:24/78 - (30%)
Similarity:32/78 - (41%) Gaps:21/78 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1462 KKCSHCGDELGKLCYYVGCRGAAMIIESLLLF----YHINCFKCCVCHVQL-GDGLNGTDVRVRN 1521
            |||:.|...:      .|.|||..|     .|    :|..||.|..|.|.| |:|.     ..:|
  Rat   220 KKCAACTKPI------TGLRGAKFI-----CFQDRQWHSECFNCGKCSVSLVGEGF-----LTQN 268

  Fly  1522 HKLHCQNCYSSDD 1534
            .::.|:.|.|..|
  Rat   269 MEILCRKCGSGAD 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823 11/36 (31%)
Fhl5NP_001013106.1 LIM <6..34 CDD:413332
LIM1_FHL 37..95 CDD:188729
LIM2_FHL5 102..155 CDD:188812
LIM 163..214 CDD:413332
LIM4_FHL 222..277 CDD:188733 19/70 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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