DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smash and Zyx

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001276546.1 Gene:Zyx / 22793 MGIID:103072 Length:564 Species:Mus musculus


Alignment Length:440 Identity:94/440 - (21%)
Similarity:144/440 - (32%) Gaps:151/440 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1155 IGNG------MLSAFQPPQHHQVQMP-PPHP--QQIYANVPQQ-QQQMVLHAYHQMDTDYRKSMS 1209
            ||.|      :..||.||....::.| ||.|  :.|:.:.|.. :::....|..|:....|:.:.
Mouse    79 IGEGDDSEGALGGAFPPPPPPMIEEPFPPAPLEEDIFPSPPPPLEEEGGPEAPTQLPPQPREKVC 143

  Fly  1210 --DLNEFSNCLILPPTPPTKPLRAMQLNANGHGLEPDYAV------STRQRQPPAPYGGSLVKIA 1266
              ||...|...:|.......|.:|..  ::|: :.|..|.      ||:    ||| ||:     
Mouse   144 SIDLEIDSLSSLLDDMTKNDPFKARV--SSGY-VPPPVATPFVPKPSTK----PAP-GGT----- 195

  Fly  1267 GAPMPP-RLPGQGYPIQAPTA----------PAYHHQSAQNLSNMSRNTL----LALSATPKPKY 1316
             ||:|| :.|....|...|.|          .|..|...|.:|  |.||.    |:.:.||.||:
Mouse   196 -APLPPWKTPSSSQPPPQPQAKPQVQLHVQPQAKPHVQPQPVS--SANTQPRGPLSQAPTPAPKF 257

  Fly  1317 ADGWVQVQQRKSYDSQQTSDAAWLAAQQQKRKSM--PDYGGALYNNNHWLLQEAEQRRIEQLNRR 1379
            |    .|..:.:....:.|..|......|..:.|  ||                           
Mouse   258 A----PVAPKFTPVVSKFSPGAPSGPGPQPNQKMVPPD--------------------------- 291

  Fly  1380 SIPASKSMGKPLPDSIIQTLTERVQSKGIGDRKRFDSNGNYSQVNGNNIYQQQQ--QQKNVTNGS 1442
             .|:|.|.|.|.|.|.                       .|:|.....:.|::|  |.....|.:
Mouse   292 -APSSVSTGSPQPPSF-----------------------TYAQQKEKPLVQEKQHPQPPPAQNQN 332

  Fly  1443 SINGNSSQG-------------QEKVL---------SVSGKKKCSHCGDELGKLCYYVGCRGAAM 1485
            .:......|             .::::         ||:..:.|..|...|.:         |..
Mouse   333 QVRSPGGPGPLTLKEVEELEQLTQQLMQDMEHPQRQSVAVNESCGKCNQPLAR---------AQP 388

  Fly  1486 IIESLLLFYHINCFKCCVCHVQLGD----GLNGTDVRVRNHKLHCQNCYS 1531
            .:.:|...:||.||.|..|..||..    .|.|..        :|:.||:
Mouse   389 AVRALGQLFHITCFTCHQCQQQLQGQQFYSLEGAP--------YCEGCYT 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823 11/39 (28%)
ZyxNP_001276546.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 30..141 16/61 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..344 54/252 (21%)
PHA03247 <175..368 CDD:223021 51/260 (20%)
LIM 343..429 CDD:351770 18/102 (18%)
LIM2_Zyxin 436..495 CDD:188739
LIM3_Zyxin 496..562 CDD:188819
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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