DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smash and Lims2

DIOPT Version :9

Sequence 1:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001366066.1 Gene:Lims2 / 225341 MGIID:2385067 Length:341 Species:Mus musculus


Alignment Length:98 Identity:26/98 - (26%)
Similarity:44/98 - (44%) Gaps:34/98 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1460 GKKKCSH------------CGDELGKLCYYVGCRGAAMIIESLLLFYHINCFKCCVCHVQLGD-G 1511
            |:|.|.|            ||:      :.:|     .:|:::...:|..||:|.:|.|:|.| |
Mouse    60 GRKYCEHDFQMLFAPCCGFCGE------FVIG-----RVIKAMNANWHPGCFRCELCDVELADLG 113

  Fly  1512 LNGTDVRVRNHKLH-CQNCYSSD--DGI-KFSC 1540
            .      |:|...| |:.|::.:  .|: ||.|
Mouse   114 F------VKNAGRHLCRPCHNREKAKGLGKFIC 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823 13/37 (35%)
Lims2NP_001366066.1 LIM1_PINCH 15..73 CDD:188717 4/12 (33%)
LIM2_PINCH 76..127 CDD:188718 17/67 (25%)
LIM3_PINCH 140..190 CDD:188719 1/1 (100%)
LIM4_PINCH 196..249 CDD:188720
LIM5_PINCH 257..310 CDD:188721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.