DRSC/TRiP Functional Genomics Resources

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Protein Alignment spartin and AT4G35985

DIOPT Version :9

Sequence 1:NP_001246910.1 Gene:spartin / 40582 FlyBaseID:FBgn0037265 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_567995.1 Gene:AT4G35985 / 829753 AraportID:AT4G35985 Length:448 Species:Arabidopsis thaliana


Alignment Length:443 Identity:98/443 - (22%)
Similarity:170/443 - (38%) Gaps:132/443 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 NASGAPKTYRELAAGLRELLAVRDAKV-LLDELFRAQVKMYRIE-ASGS---VTTISGSSTMSLV 198
            :||..|....|:      :|.:..|.| |:|       |.|.:| |.|.   :..:.|..|:: |
plant    60 SASAPPLATEEV------ILTIHGAMVHLID-------KSYSVELACGDLEILRLVQGDITVA-V 110

  Fly   199 MCTVGGKWKYLSGIYFIQCSMPNEGTAGIWLYPLV---PSITNCYQTEYGAFIFPDMECQQPGNA 260
            ...||.:         ||             :||.   |:: ...::.|...:.|..|.:...::
plant   111 FARVGDE---------IQ-------------WPLTKDEPAV-KVDESHYFFSLRPVKESESSDHS 152

  Fly   261 ----------FGLMLTKEGQTSRTEDELEDLQQFFLDLL----------EAVLAGTVVQLKSPTS 305
                      :||.:..:||    |..||.|.:...|..          |.||..|..:..||..
plant   153 VNETENEMLNYGLTMASKGQ----EPMLEKLDKILADYSSFTAEEKQKEENVLDLTAAKETSPEE 213

  Fly   306 QR-------------------------AGLASDTV-SGSEQVSRHIVSAADFIASNLVRGAEKTG 344
            .:                         :|:|:..: :||.|:.:.|:...|.....|:.|.:   
plant   214 LKGKRKKMVEKQCTAYWTTLAPNVEDYSGVAAKLIAAGSGQLIKGILWCGDLTMDRLMWGND--- 275

  Fly   345 GFMLRSTPYIISKMTPASMDAQVPSSVQTSVEVAQKVTHAAAGMTGWIAGKVGTASMAVGRYLAP 409
             ||.:       |::.|..:.||.......::..:|:|.    ||..:|..|.:..:.|..:.:.
plant   276 -FMKK-------KLSKAEKERQVSPGTLKRLKRVKKMTK----MTEKVANGVLSGVVKVSGFFSS 328

  Fly   410 HIQEQGSKLLQKGFGYDTSEANSTMEGAMTIAAGAVEGVSTVFDGLETSAKILGSSLSENSVKII 474
            .:  ..||..||.||        .:.|.|.:|  .::|.:.|.|.:|.:.:.:..:.|:.:.:|:
plant   329 SV--INSKAGQKLFG--------LLPGEMVLA--TLDGFNKVCDAVEVAGRHVMKTTSDVTTEIV 381

  Fly   475 EHKYGQQT------GNLASG-TFDTVGNVFVVSQNVN---YITPKGIAKKMVK 517
            :||||.:|      |..|:| .|.|...||.:.|.:|   .:.|..:||.:||
plant   382 DHKYGAKTAQATNEGLSAAGHAFGTAWTVFKIRQALNPKSAMKPSSLAKTVVK 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spartinNP_001246910.1 MIT_spastin 15..97 CDD:239142
Senescence 325..511 CDD:284359 47/195 (24%)
AT4G35985NP_567995.1 Senescence 248..413 CDD:399715 47/191 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21068
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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