DRSC/TRiP Functional Genomics Resources

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Protein Alignment spartin and AT4G15450

DIOPT Version :9

Sequence 1:NP_001246910.1 Gene:spartin / 40582 FlyBaseID:FBgn0037265 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_193280.5 Gene:AT4G15450 / 827216 AraportID:AT4G15450 Length:381 Species:Arabidopsis thaliana


Alignment Length:436 Identity:70/436 - (16%)
Similarity:145/436 - (33%) Gaps:136/436 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 AEMDTKRPPLLAENPSTQYG-------------------IANASGAPKTYRELAAGLRELLAVRD 162
            ::.:|::|....:.....|.                   :.|.|.|.    |||||..||:.|.|
plant     9 SKTETQQPSSYGQQQDAMYSSYGTVSDEVLLQIHGCRAHLINGSEAV----ELAAGDFELVQVLD 69

  Fly   163 AKVLLDELFRAQVKMYRIEASGSVTTISGSSTMSLVMCTVGG--KWKYLSGIYFIQCSMPNEGTA 225
            :.|.|..:.|                             :|.  :|..:.....::....:    
plant    70 SNVALAMVVR-----------------------------IGNDLQWPVIKDEPVVKLDSRD---- 101

  Fly   226 GIWLYPLVPSITNCYQTEYGAFIFPDMECQQPGNAFGLMLTKEGQTSRTEDELEDLQQFFLDLLE 290
              :|:.|  .:.:.....||...||                        .||.:.:....::||:
plant   102 --YLFTL--PVKDGEPLSYGITFFP------------------------IDENDIVFVNSIELLD 138

  Fly   291 AVLAGTVVQLKSPTSQRAGLASDTVSGSEQVS-----------RHIVSAADFIA---SNLVRG-- 339
            ..|........||:|..:..:|.:.|.:..:.           .::|:.|  ||   .:::||  
plant   139 DFLRENSCFSSSPSSSSSSSSSSSSSVNNGIDWKEFAPKIEDYNNVVAKA--IAGGTGHIIRGMF 201

  Fly   340 ---------AEKTGGFMLRSTPYIISKMTPASMDAQVPSS---VQTSVEVAQKVTHAAAGMTGWI 392
                     ..|.|..|:...    .|...||......::   :..:::..:|::.|...::..:
plant   202 KCSNAYTNQVHKGGEIMITKA----EKKNGASSKRNATTNKNQINKNLQRVRKLSRATEKLSKTM 262

  Fly   393 AGKVGTASMAVGRYLAPHIQEQGSKLLQKGFGYDTSEANSTMEGAMTIAAGAVEGVSTVFDGLET 457
            ...||..|   |..:.|.::.:..|..           .|.:.|.:.:|  :::.::.:.|..|.
plant   263 LNGVGVVS---GSVMGPVVKSKPGKAF-----------FSMVPGEVLLA--SLDALNKLLDAAEA 311

  Fly   458 SAKILGSSLSENSVKIIEHKYGQQTGNLASGTFDTVGNVFVVSQNV 503
            :.:...|:.|:.:.:::..:.|:..|........|||:....:.||
plant   312 AERQTLSATSKATTRMVSERLGESAGEATKDVLGTVGHAAGTAWNV 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spartinNP_001246910.1 MIT_spastin 15..97 CDD:239142
Senescence 325..511 CDD:284359 34/196 (17%)
AT4G15450NP_193280.5 Senescence 189..364 CDD:284359 32/189 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21068
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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