DRSC/TRiP Functional Genomics Resources

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Protein Alignment spartin and Spg20

DIOPT Version :9

Sequence 1:NP_001246910.1 Gene:spartin / 40582 FlyBaseID:FBgn0037265 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001138459.1 Gene:Spg20 / 229285 MGIID:2139806 Length:671 Species:Mus musculus


Alignment Length:664 Identity:149/664 - (22%)
Similarity:257/664 - (38%) Gaps:179/664 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IRTAYKAAMTQVDLAVSHEEQESPGQAIVAYELALRMIEDTFGIPVGLPNKIDTVQAEWNDACAL 79
            |:.||:.|...|:..::.:|.....:|...|:..:..:.....|....|......   |..|..:
Mouse    16 IKEAYEKAFMFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISIAAAEPGHTGPA---WEAARQM 77

  Fly    80 IQKLKSAETELRYRLKVLR-------------------------SQKQSIDDSAVEATEESRAEM 119
            .||:|.....:|.||::|.                         :.|:|.:..:| :|...|||:
Mouse    78 QQKMKETLQNVRTRLEILEKGLATSLRNDLQDVPKLYPEFPPKDACKKSPEQESV-STAPQRAEV 141

  Fly   120 D------------------TKRPPLLAENP------------STQYGIANAS------------G 142
            |                  ...|...||.|            :..||..:..            .
Mouse   142 DGSASAACAGPSGAPSALPVPSPSCPAEAPPAYSPQAAEGHYTVSYGTDSGEFSSVGEDFYRNRS 206

  Fly   143 APKTYRELAAGLRELLAVRDAKVLLDELFRAQVKMYRIEASGSVTTISGSSTMSLVMCTVGGKWK 207
            .|.....|.....||:.:.:.           |:::.:..:|.|:..|...              
Mouse   207 QPPPLETLGLDADELILIPNG-----------VQIFFVNPAGEVSAPSYPG-------------- 246

  Fly   208 YLSGIYFIQCSM-------PNEGTAGIWLYPLVPSITNCYQTEYGAFIFPDMECQQPGNAFGLML 265
            ||..:.|:..|:       |.......|||||||..:...:...||::|||...|..|...|::|
Mouse   247 YLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTVGAYMFPDTMLQAAGCFVGVVL 311

  Fly   266 TKEGQTSRTEDE---LEDLQQFFLDL-LEA-----------------------VLAGTVVQLKS- 302
            :.|    ..||:   .|||.:...|| |:|                       ..:||.|:..| 
Mouse   312 SSE----LPEDDRELFEDLLRQMSDLRLQANWNREEDEFQIPGRSSHPSEPPKEASGTDVRQSSS 372

  Fly   303 --------------------------------------PTSQRAGLASDTVSGSEQVSRHIVSAA 329
                                                  |:|:..  :.:....||:|:.:|:|.|
Mouse   373 SGSSIDQGSKDARHKGKRGKKTKDSSEEVNLSQIVPCEPSSEEK--SKELPEWSEKVAHNILSGA 435

  Fly   330 DFIASNLVRGAEKTGGFMLRSTPYIISKMTPASMDAQVPSSVQTSVEVAQKVTHAAAGMTGWIAG 394
            .:::..||:|||.||..:.:....:..::.|.....:|..:|...:.:|::.|..||.::..:..
Mouse   436 SWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPAVTRGLYIAKQATGGAAKVSQLLVD 500

  Fly   395 KVGTASMAVGRYLAPHIQEQGSKLLQKGFGYDTSEANSTMEGAMTIAAGAVEGVSTVFDGLETSA 459
            .|.|.:..||:.||||:::.||||:.:....| .:..|.::|||.:||.:|:|.|||:.|||.:|
Mouse   501 GVCTVANCVGKELAPHVKKHGSKLVPESLKRD-KDGKSALDGAMVVAASSVQGFSTVWQGLECAA 564

  Fly   460 KILGSSLSENSVKIIEHKYGQQTGNLASGTFDTVGNVFVVSQNVNYITPKGIAKKMVKRTGEAVV 524
            |.:.:::|..:|:.:.:|||...|.......|:..||.:.:.|::.|..|.:.||..|:||..::
Mouse   565 KCIVNNVSAETVQTVRYKYGHNAGEATHNAVDSAINVGLTAYNIDNIGIKAMVKKTAKQTGHTLL 629

  Fly   525 SDY---KRDLRKSE 535
            .||   :|..|:|:
Mouse   630 EDYQIVERPQRESQ 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spartinNP_001246910.1 MIT_spastin 15..97 CDD:239142 18/81 (22%)
Senescence 325..511 CDD:284359 58/185 (31%)
Spg20NP_001138459.1 MIT_spastin 16..95 CDD:239142 18/81 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 110..175 12/65 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 346..421 6/76 (8%)
Senescence 431..615 CDD:399715 57/184 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 635..671 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842813
Domainoid 1 1.000 107 1.000 Domainoid score I6547
eggNOG 1 0.900 - - E1_KOG2709
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 136 1.000 Inparanoid score I4542
Isobase 1 0.950 - 0 Normalized mean entropy S7342
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006009
OrthoInspector 1 1.000 - - oto93057
orthoMCL 1 0.900 - - OOG6_107088
Panther 1 1.100 - - LDO PTHR21068
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3532
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.730

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