DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and scnn1b

DIOPT Version :10

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_001072437.1 Gene:scnn1b / 779891 XenbaseID:XB-GENE-949109 Length:646 Species:Xenopus tropicalis


Alignment Length:616 Identity:129/616 - (20%)
Similarity:204/616 - (33%) Gaps:185/616 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 TYHE----YCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTLIQSAYTKWTETPVIVSF 95
            ||.|    :|.||:.||.:.: .:|.| ::|:.|..:         ||:.:....|....:|:::
 Frog    27 TYKELLVWFCDNTNTHGPKRI-IKEGP-KKRVMWFIL---------TLVFAGLVFWQWGVLILTY 80

  Fly    96 AEKSTPV------WNIPFPAVTVC-------SETKRVLKQKGKETTYADLYSQFSEDMRASRVFR 147
            ......|      ..:.|||||||       |..|.:||                 |:.|.....
 Frog    81 LSYGVSVSLSIGFKTMEFPAVTVCNANPYKYSRVKPLLK-----------------DLDALVATA 128

  Fly   148 PENVSALEMEEFRTLLHVCNTQIIEED------IPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWL 206
            .:.:.....::..|.......|.:..|      |||:..|:.|..:.:...:  ||....|.:  
 Frog   129 LDRIQFSSQDQANTFTQSSTNQNVTLDPTLWNHIPLVVIDETDPSNPIVNNI--FDNNAIYSK-- 189

  Fly   207 SRFGECETFFRKTLTEEGICY-----------TFNGLRATEIYRDDT---------YQYQHS--- 248
                  ...||.: :|:...|           |.|..:.  :||:.|         |..|.|   
 Frog   190 ------NNSFRNS-SEDQTSYSQRYKVAMKLCTNNNTQC--VYRNFTSGIQALQEWYLLQLSSIF 245

  Fly   249 -------------------------GEPLEMENISSQHTA---------WTLETGYALDSDVETF 279
                                     |:|....|.:..:.|         |..|     ..|    
 Frog   246 SNVPLADRIAMGFKAEDLILTCLFGGQPCSYRNFTRIYDADYGNCYIFNWGQE-----GED---- 301

  Fly   280 PARVLSAGARSGIFLALQSFKQE-VDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPMG 343
            |....:.||..|:.|.|...:.| :.|     ||.....:   ::||.....|.|....:....|
 Frog   302 PMASANPGADFGLKLVLDIEQGEYLPY-----VQTTAAAR---LILHQQRSFPFVKDLGIYAMPG 358

  Fly   344 KEVLIAVKPNMITMSSGIAEYH---------PVRRQCFLSHERSLRFFKVYTESNCQLECLANFT 399
            .|..|||..:.:....  |.|.         ||:.   |..|    |...|:..:|...|.....
 Frog   359 TETSIAVLVDQLEHME--APYSSCTVNGSDIPVQN---LYAE----FNSSYSIQSCLRSCYQEQM 414

  Fly   400 LTKCGCVKFSMPRNVDMPVCGEDK----IHCYDRAERELLVREFKRVKALNAGRENSRSVESACN 460
            :..|||..:..|.......|..||    :.||......:            |.||:..|:     
 Frog   415 VQTCGCADYQYPLPNGSEYCSNDKYPDWVPCYYGLRDSV------------ADRESCISL----- 462

  Fly   461 CMPACTSLVYNTEISQANFD-------LEEMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITSK 518
            |...|....|...||.|::.       :..:|..|.|:........:.:.||:|||::..:.:..
 Frog   463 CQQPCNDTQYKMVISMADWPSAGAQDWIFHVLSYEKDSSHNITVNRNGIVRLNIYFQEFNYRSIT 527

  Fly   519 RSELYGMTEFLANCGGIFGLFMGFSILSLVE 549
            .||...:...|:|.||.||.:||.|:|.::|
 Frog   528 ESEATNVVWLLSNLGGQFGFWMGGSVLCIIE 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:459966 126/608 (21%)
scnn1bNP_001072437.1 ENaC 27..632 CDD:273304 129/616 (21%)

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