DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and scnn1b

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_001072437.1 Gene:scnn1b / 779891 XenbaseID:XB-GENE-949109 Length:646 Species:Xenopus tropicalis


Alignment Length:616 Identity:129/616 - (20%)
Similarity:204/616 - (33%) Gaps:185/616 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 TYHE----YCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTLIQSAYTKWTETPVIVSF 95
            ||.|    :|.||:.||.:.: .:|.| ::|:.|..:         ||:.:....|....:|:::
 Frog    27 TYKELLVWFCDNTNTHGPKRI-IKEGP-KKRVMWFIL---------TLVFAGLVFWQWGVLILTY 80

  Fly    96 AEKSTPV------WNIPFPAVTVC-------SETKRVLKQKGKETTYADLYSQFSEDMRASRVFR 147
            ......|      ..:.|||||||       |..|.:||                 |:.|.....
 Frog    81 LSYGVSVSLSIGFKTMEFPAVTVCNANPYKYSRVKPLLK-----------------DLDALVATA 128

  Fly   148 PENVSALEMEEFRTLLHVCNTQIIEED------IPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWL 206
            .:.:.....::..|.......|.:..|      |||:..|:.|..:.:...:  ||....|.:  
 Frog   129 LDRIQFSSQDQANTFTQSSTNQNVTLDPTLWNHIPLVVIDETDPSNPIVNNI--FDNNAIYSK-- 189

  Fly   207 SRFGECETFFRKTLTEEGICY-----------TFNGLRATEIYRDDT---------YQYQHS--- 248
                  ...||.: :|:...|           |.|..:.  :||:.|         |..|.|   
 Frog   190 ------NNSFRNS-SEDQTSYSQRYKVAMKLCTNNNTQC--VYRNFTSGIQALQEWYLLQLSSIF 245

  Fly   249 -------------------------GEPLEMENISSQHTA---------WTLETGYALDSDVETF 279
                                     |:|....|.:..:.|         |..|     ..|    
 Frog   246 SNVPLADRIAMGFKAEDLILTCLFGGQPCSYRNFTRIYDADYGNCYIFNWGQE-----GED---- 301

  Fly   280 PARVLSAGARSGIFLALQSFKQE-VDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPMG 343
            |....:.||..|:.|.|...:.| :.|     ||.....:   ::||.....|.|....:....|
 Frog   302 PMASANPGADFGLKLVLDIEQGEYLPY-----VQTTAAAR---LILHQQRSFPFVKDLGIYAMPG 358

  Fly   344 KEVLIAVKPNMITMSSGIAEYH---------PVRRQCFLSHERSLRFFKVYTESNCQLECLANFT 399
            .|..|||..:.:....  |.|.         ||:.   |..|    |...|:..:|...|.....
 Frog   359 TETSIAVLVDQLEHME--APYSSCTVNGSDIPVQN---LYAE----FNSSYSIQSCLRSCYQEQM 414

  Fly   400 LTKCGCVKFSMPRNVDMPVCGEDK----IHCYDRAERELLVREFKRVKALNAGRENSRSVESACN 460
            :..|||..:..|.......|..||    :.||......:            |.||:..|:     
 Frog   415 VQTCGCADYQYPLPNGSEYCSNDKYPDWVPCYYGLRDSV------------ADRESCISL----- 462

  Fly   461 CMPACTSLVYNTEISQANFD-------LEEMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITSK 518
            |...|....|...||.|::.       :..:|..|.|:........:.:.||:|||::..:.:..
 Frog   463 CQQPCNDTQYKMVISMADWPSAGAQDWIFHVLSYEKDSSHNITVNRNGIVRLNIYFQEFNYRSIT 527

  Fly   519 RSELYGMTEFLANCGGIFGLFMGFSILSLVE 549
            .||...:...|:|.||.||.:||.|:|.::|
 Frog   528 ESEATNVVWLLSNLGGQFGFWMGGSVLCIIE 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 126/608 (21%)
scnn1bNP_001072437.1 ENaC 27..632 CDD:273304 129/616 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48391
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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