DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rpk and asic2

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:XP_005164179.1 Gene:asic2 / 407669 ZFINID:ZDB-GENE-040513-4 Length:564 Species:Danio rerio


Alignment Length:561 Identity:126/561 - (22%)
Similarity:208/561 - (37%) Gaps:150/561 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 TSIHGVQYLGEQERPFRERIFWLFVF-----LISIYGCSTLIQSAYTKW----TETPVIVSFAEK 98
            |.:||::::.........|.||:..|     |:..:..:.|:.     |    |.|.|...:|::
Zfish    71 TRLHGLRHICSPSNSLSRRAFWMIAFCTCLGLLLSWSSNRLLH-----WLAFPTHTRVHTEWAKE 130

  Fly    99 STPVWNIPFPAVTVCSETKRVLKQKGKETTYADLY--SQFSEDMRASRVFRPENVSALE------ 155
                  :.||.||:|:.....|    ...|.:|||  ..:...:.|:|..||..:..|:      
Zfish   131 ------LAFPTVTICNNNPVRL----YHLTKSDLYFAGHWLGLLLANRTARPLVLDLLQDDRRGW 185

  Fly   156 ---MEEFRTLLHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWLSRFGECETF-F 216
               :.:||..|.....:          |..|::.|   |:..|.:.....|::  |...|... |
Zfish   186 FSKLSDFRLFLPPRRFE----------GTSLEFMD---RLGHQLEDMLLACKY--RGEPCGAHNF 235

  Fly   217 RKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEPLEMENISSQHTAWTLETGYALDSDVETFPA 281
            ....|..|.||.||   |.|           .|:              ||.|             
Zfish   236 STVFTRYGKCYMFN---AAE-----------EGK--------------TLRT------------- 259

  Fly   282 RVLSAGARSGIFLALQSFKQEVDYACRGPVQG------FKVGKFENVLLHAPDDVPQVSKQFVRI 340
             .:..|..:|:.:.|..  |:.:|.   ||.|      |:.|  ..|.:|:..:.|.|.:....:
Zfish   260 -TMKGGTGNGLEIMLDI--QQDEYL---PVWGETEETAFEAG--VRVQIHSQAEPPFVHELGFGV 316

  Fly   341 PMGKEVLIAVKPNMITMSSGIAEYHPVRRQCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGC 405
            ..|.:..:|.:...:|.      ..|...:| :|.......|:||:.|.|::||...:.:..|.|
Zfish   317 APGFQTFVATQEQRLTY------LPPPWGEC-VSRALDSGLFQVYSVSACRIECETRYIVENCNC 374

  Fly   406 VKFSMPRNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAGRENSRSVESA-CNCMPACTSLV 469
            ....||.  |.|.|..::..  |.||..|        .||:|       ||.. |.|...|....
Zfish   375 RMVYMPG--DSPYCTPEQYK--DCAEPAL--------AALSA-------VEGTNCICRSPCNMTR 420

  Fly   470 YNTEISQANFDLEEMLVAEGDTEFL-------KEYPGSQMSRLSIYFKQSQFITSKRSELYGMTE 527
            ||.|:|...      :.::....:|       ::|....:..|.::|:...:.|.::.:.|.:..
Zfish   421 YNKELSMVK------IPSKTSARYLEKKFNRSEKYITDNILVLDVFFEALNYETIEQKKAYEVAG 479

  Fly   528 FLANCGGIFGLFMGFSILSLVEMI-YHFTL---RLFTNLKR 564
            .|.:.||..|||:|.|||:|:|:. |.:.:   ||...|.|
Zfish   480 LLGDIGGQMGLFIGASILTLLELFDYAYEVVKERLLDLLNR 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 121/544 (22%)
asic2XP_005164179.1 ASC 71..538 CDD:295594 126/561 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 101 1.000 Domainoid score I6864
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 102 1.000 Inparanoid score I4956
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.970

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