DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and egas-4

DIOPT Version :10

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_501207.2 Gene:egas-4 / 3564809 WormBaseID:WBGene00018906 Length:883 Species:Caenorhabditis elegans


Alignment Length:365 Identity:76/365 - (20%)
Similarity:131/365 - (35%) Gaps:114/365 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 GICYTFNGLRATEIYRDDTYQYQHSGEP--LEME-NI-SSQHTAWTLETGYALDSDVETFPARVL 284
            |.|:|||.:.::     ..|:.:.||.|  |||: |: ..::..||...|               
 Worm   610 GNCFTFNHMNSS-----FKYEARSSGYPGGLEMQMNVKQDEYLPWTETAG--------------- 654

  Fly   285 SAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPMGKEVLIA 349
                    .:...|.|:|.                             |:.:.|||.........
 Worm   655 --------VMVFTSTKEEA-----------------------------VTSESVRINTAPHFESR 682

  Fly   350 VKPNMITMSSGIAEYHPVRRQ---CF--LSHERSLRFFKVYTESNCQLECLANFTLTKCGCV--K 407
            :..|.:       :|:.:..:   |.  :|..:|..:...||...|...|..:.....|||:  :
 Worm   683 IAINRV-------DYYRLGGRYGVCINSVSEVKSYYYDGDYTTDGCLRSCYQDVVNGDCGCMDPR 740

  Fly   408 FSMPRNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAGRENSRSVESA---CNCMPACTSLV 469
            :.||.  |...|...:..|.|    ||:               :||...|.   |.|...|:..|
 Worm   741 YPMPN--DGISCSISQKTCID----ELV---------------DSRGDPSTWPECTCPLPCSQTV 784

  Fly   470 YNTEISQANF-----DLEEMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITSKRSELYGMTEFL 529
            |.:::|:..:     |.||...  ..|...:.:..|.:.|:|:  .:..::....:....:|:|:
 Worm   785 YTSKLSRLPYVNKIVDCEEAYT--NKTACYETFLDSVILRISL--PKLDYMIYSETPAMDLTKFM 845

  Fly   530 ANCGGIFGLFMGFSILSLVEMIYHF----TLRLFTNLKRL 565
            :..|||..:.:|.||:|.||:.:.|    .:.||.  |||
 Worm   846 SYLGGILSILIGVSIVSFVELFFLFVQLIVILLFN--KRL 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:459966 70/346 (20%)
egas-4NP_501207.2 EGF 101..131 CDD:394967
deg-1 <468..869 CDD:273309 70/347 (20%)
Blue background indicates that the domain is not in the aligned region.

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