DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and Scnn1b

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_036780.1 Gene:Scnn1b / 24767 RGDID:3640 Length:638 Species:Rattus norvegicus


Alignment Length:645 Identity:136/645 - (21%)
Similarity:212/645 - (32%) Gaps:219/645 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 TYHE----YCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGC---STLIQSAYTKWTETPVI 92
            ||.|    ||.||:.||.:.: ..|.|.::.:::|...|.:...|   ...||: |..| |..|.
  Rat    21 TYKELLVWYCNNTNTHGPKRI-ICEGPKKKAMWFLLTLLFACLVCWQWGVFIQT-YLSW-EVSVS 82

  Fly    93 VSFAEKSTPVWNIPFPAVTVC-------SETKRVLKQKGKETTYADLYSQFSEDMRASRVFRPE- 149
            :|...|:     :.|||||||       |:.|.:||         |||......:  .::..|: 
  Rat    83 LSMGFKT-----MNFPAVTVCNSSPFQYSKVKHLLK---------DLYKLMEAVL--DKILAPKS 131

  Fly   150 --------------NVSALEMEEFRTLLH--------------------VCNTQIIEEDIPLIAG 180
                          |.:.|.:.:.|...|                    .||.|..:..:.|.:.
  Rat   132 SHTNTTSTLNFTIWNHTPLVLIDERNPDHPVVLNLFGDSHNSSNPAPGSTCNAQGCKVAMRLCSA 196

  Fly   181 DD--------------------LDYFDVLQRMLPQF--------DRYFFYCRWLSRFGECETFFR 217
            :.                    |...::..::|||.        ||....|    .|| .|....
  Rat   197 NGTVCTFRNFTSATQAVTEWYILQATNIFSQVLPQDLVGMGYAPDRIILAC----LFG-TEPCSH 256

  Fly   218 KTLT-----EEGICYTFNGLRATEIYRDDTYQYQHSGEPLEMENISSQHTAWTLETGYALDSDVE 277
            :..|     :.|.||.||                                 |.: |..||.|   
  Rat   257 RNFTPIFYPDYGNCYIFN---------------------------------WGM-TEKALPS--- 284

  Fly   278 TFPARVLSAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPM 342
                  .:.|...|:.|.| ...|| ||.   |......|  ..::||.....|.:.::.:....
  Rat   285 ------ANPGTEFGLKLIL-DIGQE-DYV---PFLASTAG--ARLMLHEQRTYPFIREEGIYAMA 336

  Fly   343 GKEVLIAVKPNMITMSSGIAE-YHPVRRQCFLSHERSLRFFKVYTESN-------CQLECLANFT 399
            |.|..|.|   ::....|..| |.|    |.::.. .:....:|::.|       |...|..:..
  Rat   337 GTETSIGV---LLDKLQGKGEPYSP----CTMNGS-DVAIQNLYSDYNTTYSIQACLHSCFQDHM 393

  Fly   400 LTKCGCVKFSMP--------RNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAGRENSRSVE 456
            :..|.|..:..|        .|.|.|    |..:||...:..::.||                  
  Rat   394 IHNCSCGHYLYPLPAGEKYCNNRDFP----DWAYCYLSLQMSVVQRE------------------ 436

  Fly   457 SAC--NCMPACTSLVYNTEISQANFDLE-------EMLVAEGDTEFLKEYPGSQMSRLSIYFKQS 512
             .|  .|..:|....|...||.|::..|       .:|..|.|...........:.:|:|||::.
  Rat   437 -TCLSMCKESCNDTQYKMTISMADWPSEASEDWILHVLSQERDQSSNITLSRKGIVKLNIYFQEF 500

  Fly   513 QFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVE-------MIYHFTLRLFTNLKRL 565
            .:.|.:.|....:...|:|.||.||.:||.|:|.|:|       .|:...::|..:.|.|
  Rat   501 NYRTIEESPANNIVWLLSNLGGQFGFWMGGSVLCLIEFGEIIIDFIWITVIKLVASCKGL 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 129/622 (21%)
Scnn1bNP_036780.1 ENaC 21..621 CDD:273304 136/645 (21%)
deg-1 29..538 CDD:273309 128/613 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 598..620
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 111 1.000 Domainoid score I6095
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.720

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