DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and Scnn1b

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_001258952.1 Gene:Scnn1b / 20277 MGIID:104696 Length:638 Species:Mus musculus


Alignment Length:632 Identity:143/632 - (22%)
Similarity:210/632 - (33%) Gaps:193/632 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 TYHE----YCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGC---STLIQSAYTKWTETPVI 92
            ||.|    ||.||:.||.:.: ..|.|.::.:::|...|.:...|   ...||: |..| |..|.
Mouse    21 TYKELLVWYCNNTNTHGPKRI-ICEGPKKKAMWFLLTLLFACLVCWQWGVFIQT-YLSW-EVSVS 82

  Fly    93 VSFAEKSTPVWNIPFPAVTVC-------SETKRVLKQKGKETTYADLYSQFSEDMRA--SRVFRP 148
            :|...|:     :.|||||||       |:.|.:||         ||    .|.|.|  .::..|
Mouse    83 LSMGFKT-----MNFPAVTVCNSSPFQYSKVKHLLK---------DL----DELMEAVLEKILAP 129

  Fly   149 ENVSALEMEEFRTLLHVCNTQIIEEDIPLIAGDDL--DYFDVLQRMLPQFDRYFFYCRWLSRFGE 211
            |   |......|||     ...|....||:..|:.  |:..|                 |:.||:
Mouse   130 E---ASHSNTTRTL-----NFTIWNHTPLVLIDERNPDHPVV-----------------LNLFGD 169

  Fly   212 -----------------CETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEPLEMENISS 259
                             |:...|.......:|...|...||:..   |..|     .|:..||.|
Mouse   170 SHNSSNPAPGSTCNAQGCKVAMRLCSANGTVCTLRNFTSATQAV---TEWY-----ILQATNIFS 226

  Fly   260 QHTAWTL-ETGYALDSDV-----------------------------------ETFPARVLSAGA 288
            |.....| ..|||.|..:                                   ||.|:  .:.|.
Mouse   227 QVLPQDLVGMGYAPDRIILACLFGTEPCSHRNFTPIFYPDYGNCYIFNWGMTEETLPS--ANPGT 289

  Fly   289 RSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPMGKEVLIAVKPN 353
            ..|:.|.| ...|| ||.   |......|  ..::||.....|.:.::.:....|.|..|.|..:
Mouse   290 EFGLKLIL-DIGQE-DYV---PFLASTAG--ARLMLHEQRTYPFIREEGIYAMAGTETSIGVLVD 347

  Fly   354 MITMSSGIAEYHPVRRQCFL--SHERSLRFFKVYTES----NCQLECLANFTLTKCGCVKFSMP- 411
            .:....  ..|.|    |.:  |.......:.||..:    .|...|..:..:..|.|..:..| 
Mouse   348 KLQRKG--EPYSP----CTMNGSDVAIKNLYSVYNTTYSIQACLHSCFQDHMIRNCSCGHYLYPL 406

  Fly   412 -------RNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAGRENSRSVESAC--NCMPACTS 467
                   .|.|.|    |..:||...:..:..||                   .|  .|..:|..
Mouse   407 PEGEKYCNNRDFP----DWAYCYLNLQMSVTQRE-------------------TCLSMCKESCND 448

  Fly   468 LVYNTEISQANFDLE-------EMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITSKRSELYGM 525
            ..|...||.|::..|       .:|..|.|...........:.:|:|||::..:.|.:.|....:
Mouse   449 TQYKMTISMADWPSEASEDWILHVLSQERDQSSNITLSRKGIVKLNIYFQEFNYRTIEESPANNI 513

  Fly   526 TEFLANCGGIFGLFMGFSILSLVE-------MIYHFTLRLFTNLKRL 565
            ...|:|.||.||.:||.|:|.|:|       .|:...::|..:.|.|
Mouse   514 VWLLSNLGGQFGFWMGGSVLCLIEFGEIIIDFIWITIIKLVASCKGL 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 136/609 (22%)
Scnn1bNP_001258952.1 ENaC 21..621 CDD:273304 143/632 (23%)
deg-1 29..538 CDD:273309 135/600 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 594..620
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6420
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8693
orthoMCL 1 0.900 - - OOG6_100105
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.720

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