DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and Scnn1a

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_035454.2 Gene:Scnn1a / 20276 MGIID:101782 Length:700 Species:Mus musculus


Alignment Length:632 Identity:119/632 - (18%)
Similarity:210/632 - (33%) Gaps:224/632 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 FITTYHE----YCRNTSIHGVQYLGEQERPFRERIFWLFVFLIS---IYGCSTLIQSAYTKWTET 89
            |..:|.|    :|.||:|||...|...:....:..||..::|.:   :|....|:...|..:   
Mouse    77 FHRSYRELFQFFCNNTTIHGAIRLVCSKHNRMKTAFWAVLWLCTFGMMYWQFALLFEEYFSY--- 138

  Fly    90 PVIVSFAEKSTPVWNIPFPAVTVC-------SETKRVLKQKGK--ETTYADLYS----------- 134
            ||.::....|.   .:.|||||||       :|.|..|::..:  |.|..|||.           
Mouse   139 PVSLNINLNSD---KLVFPAVTVCTLNPYRYTEIKEDLEELDRITEQTLFDLYKYNSSYTRQAGG 200

  Fly   135 --QFSEDMRAS------RVFRP-----------------ENVSALEMEEFRTLLHVCNTQIIEED 174
              :.:.|:|.:      |:..|                 :|...::.::::....:||..  :.|
Mouse   201 RRRSTRDLRGALPHPLQRLRTPPPPNPARSARSASSSVRDNNPQVDRKDWKIGFQLCNQN--KSD 263

  Fly   175 I---PLIAGDD-------LDYFDVLQRMLPQ---------FDRYFFYCRW---------LSRFGE 211
            .   ...:|.|       ..|.::|.| ||.         ...:.|.||:         .|:|..
Mouse   264 CFYQTYSSGVDAVREWYRFHYINILSR-LPDTSPALEEEALGSFIFTCRFNQAPCNQANYSQFHH 327

  Fly   212 CETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEPLEMENISSQHTAWTLETGYALDSDV 276
                     ...|.|||||....:.::                                     :
Mouse   328 ---------PMYGNCYTFNNKNNSNLW-------------------------------------M 346

  Fly   277 ETFPARVLSAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIP 341
            .:.|      |..:|:.|.|::  ::.|:.   |:.....|  ..|::|..|:...:......:.
Mouse   347 SSMP------GVNNGLSLTLRT--EQNDFI---PLLSTVTG--ARVMVHGQDEPAFMDDGGFNVR 398

  Fly   342 MGKEVLIAVKPNMITMSSG-------------IAEYHPVRRQCFLSHERSLRFFKVYTESNCQLE 393
            .|.|..|:::...:....|             :...:|.:                ||:..|...
Mouse   399 PGVETSISMRKEALDSLGGNYGDCTENGSDVPVKNLYPSK----------------YTQQVCIHS 447

  Fly   394 CLANFTLTKCGCVKFSMPRNVDMPVC-------------------GEDKIHCYDRAERELLVREF 439
            |.....:.||||.....|:...:..|                   ..|.:.|:.:..:...|..:
Mouse   448 CFQENMIKKCGCAYIFYPKPKGVEFCDYLKQSSWGYCYYKLQAAFSLDSLGCFSKCRKPCSVTNY 512

  Fly   440 KRVKALNAGRENSRSVESACNCMPACTSLVYNTEISQANFD-LEEMLVAEGDTEFLKEYPGSQMS 503
            |    |:||.....||:|.                     | :.|||..:.:.....:..|  ::
Mouse   513 K----LSAGYSRWPSVKSQ---------------------DWIFEMLSLQNNYTINNKRNG--VA 550

  Fly   504 RLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVEM 550
            :|:|:||:..:.|:..|....|...|:|.|..:.|:.|.|:||:|||
Mouse   551 KLNIFFKELNYKTNSESPSVTMVSLLSNLGSQWSLWFGSSVLSVVEM 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 116/621 (19%)
Scnn1aNP_035454.2 ENaC 80..677 CDD:273304 118/629 (19%)
deg-1 88..600 CDD:273309 116/621 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6420
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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