DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rpk and del-5

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_509838.2 Gene:del-5 / 186631 WormBaseID:WBGene00010334 Length:526 Species:Caenorhabditis elegans


Alignment Length:543 Identity:110/543 - (20%)
Similarity:181/543 - (33%) Gaps:185/543 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 KAGSVACEGFITTYHEYCRNTSIHGVQYLGEQERPFRER-----IFW------LFVFLISIYGCS 76
            :||...|:       ||...|:.||:      .|.|..|     |||      ..||.|.:  |.
 Worm    57 RAGHDGCD-------EYTNLTTFHGM------IRVFNSRNCPSLIFWCLVVTTCLVFYIMV--CG 106

  Fly    77 TLI-----QSAYTKWTETPVIVSFAEKSTPVWNIPFPAVTVCSETK----RVLKQKGKETTYADL 132
            |:|     |.::.:..||        ||....|    .:.:|||.:    .:||: .|:.|..::
 Worm   107 TMIKTYSTQPSFMRINET--------KSHRAEN----NIELCSEKQLTCNEILKE-NKQMTCKEV 158

  Fly   133 YSQFSEDMRASRVFRPENVSALEMEEFRTLLHVCNTQI-----IEEDIPLIAGDDLDYFDVLQRM 192
             ..:...:|.|.               :|.:.:....:     .|||:..::.....: .:::..
 Worm   159 -DAYCVSIRFST---------------KTKIRLKKKGLYFKHGTEEDVHYLSSKPHTH-HMIRLK 206

  Fly   193 LPQFDRYFFYCRWLSRFGECETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEPLEM-EN 256
            |.|.||..     |.| ..|.|.:|:               .|.|.:|....|::|   |.| ||
 Worm   207 LIQIDRLN-----LGR-APCTTNWRE---------------ITWIEKDSIPDYRYS---LNMCEN 247

  Fly   257 ISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFEN 321
            |.           :.|...||..                      :.|:.|.......|....::
 Worm   248 IR-----------FELTRKVEYL----------------------QYDFPCYPSCSEIKYQVSKS 279

  Fly   322 VLLHAPDDVPQVSKQFVRIPMGKEVLIAVKPNMITMSSGIAEYHPVRRQCFLSHERSL------- 379
            .|.|:.|.|              .:..:|.|. ||:.....:...:...|:|....||       
 Worm   280 KLRHSSDSV--------------VITFSVLPT-ITLMQETRKTTLIDILCYLGGASSLFMGCSCV 329

  Fly   380 -------RFFKVYTESNCQLECLA---NFTLTKCGCVKFSMPRNVDMPVCGEDKIHCYDR--AER 432
                   ..||:..:|.|..|...   :|...|.. .::|..||       :.:...:||  .|:
 Worm   330 TLMEMFVFLFKLVAKSACSQEVPEPDDSFYNDKIE-FEYSDHRN-------KRRYAIFDRETMEK 386

  Fly   433 ELLVREFKRVKALNAGRENS-RSVESACNCMPACTSLVYNTEISQANFDLEEML---VAEGDTEF 493
            .|:......||::|..:..| .||:.|    |...:|..|     .|||..::.   ::|.|.: 
 Worm   387 YLISNNSIDVKSINLDKRLSVFSVKKA----PKLRALKDN-----RNFDKIDIFDEGISENDAK- 441

  Fly   494 LKEYPGSQMSRLSIYFKQSQFIT 516
             .|...||....|:.::..:..|
 Worm   442 -NEVALSQKDECSVEYQDEKMDT 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 106/527 (20%)
del-5NP_509838.2 ASC 66..337 CDD:295594 72/380 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11690
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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