DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and acd-4

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_505230.1 Gene:acd-4 / 185036 WormBaseID:WBGene00017879 Length:613 Species:Caenorhabditis elegans


Alignment Length:570 Identity:120/570 - (21%)
Similarity:214/570 - (37%) Gaps:119/570 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LDSSKGIDLTFRRRRKAGSVACEGFITTYHEYCRNTSIHGVQ--YLGEQERPFRERIFWLFVFLI 70
            :||.|.:    |:....|||..|    |.| :...|:::|.:  :.|::.    .:|||:.| :|
 Worm    17 VDSVKKL----RKTEGVGSVYQE----TQH-FSTITTVNGPRRIFYGKRS----AQIFWILV-VI 67

  Fly    71 SI-----YGCSTLIQSAYTKWTETPVIVSFAEKSTPVWNIPFPAVTVCS----ETKRVLKQKGKE 126
            ||     |....|||..|:|.|.:.  ::|......|:   ||:||||:    :|..:.|.... 
 Worm    68 SILAFLVYQIVILIQYFYSKPTLSQ--INFITNEGAVY---FPSVTVCNLNPVKTSFIKKLNSS- 126

  Fly   127 TTYADLYSQFSEDMRASR-----VFRPENVSALEMEEFRTLLHVCNTQIIEEDIPLIAGDDLDYF 186
               .||..:....:.|::     :|...|:..|:......|:::.|    ..|..::...:...|
 Worm   127 ---GDLSEELLNYLLATKTNSMYMFNNANIFELKRAHLNALVYLAN----HPDFEIVNFLNSAQF 184

  Fly   187 DVLQRMLPQFDRYFFYCRWLSRFGECETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEP 251
            |.        |..|..|.:..:...|..:..:::|..|.|:..|       .|::|         
 Worm   185 DC--------DELFETCFYGGKQFNCCKYMTQSITSLGRCWELN-------LRNET--------- 225

  Fly   252 LEMENISSQHTAWTLETGYALDSDVETFPARVLS--AGARSG---IFLALQSFKQEVDYACRGPV 311
                      .||..:.|.:     .|.|...|.  |.||..   |.....||::          
 Worm   226 ----------DAWLTKKGRS-----GTSPKTGLQIIANARQSEQFINFHYSSFQE---------- 265

  Fly   312 QGFKVGKFENVLLHAPDDVPQVSKQFVRIPMGKEVLIAVKPNMITMSSGIAEYHPVRRQCFLSHE 376
            .||:      ..:|.|...|.::.:.:.:...:.|..|:|..:..:.:     |.....|..|..
 Worm   266 NGFR------YFIHPPHVSPDLAAEGITVSPSRVVNSAIKTVLHDLLN-----HENWGNCTSSWP 319

  Fly   377 RSLRFFKVYTESNCQLECLANFTLTKCGCVKFSMPRNVDMPVCGEDKIHCYDRAERELLVREFKR 441
            ........|:.|.||..|::|:....|||..:|...:.:..||         ....|::....|.
 Worm   320 EHYNTNLPYSSSACQALCVSNYFKKLCGCSPYSYNIDNNTQVC---------LPYEEVICMMEKM 375

  Fly   442 VKALNAGRENSRSVESACNCMPACTSLVYNTEISQAN-FDLEEMLVAEGDTEFLKEYPGSQMSRL 505
            .|:.:.|.. |........|..||....|::..|..: |:...|.....:|.....|....::.:
 Worm   376 TKSDSNGTV-SLDFPFCAECHLACQKTSYSSYTSYGDGFNYNSMKWLTRETNRSASYIRQNIAII 439

  Fly   506 SIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVEMIYHFT 555
            :|:|.:..:.:..:.:...:........|:.||:.|.|::||.|:|.:||
 Worm   440 NIHFMELFYTSYSQVKATTILNTFNKIFGLNGLWFGMSVVSLTELILYFT 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 107/534 (20%)
acd-4NP_505230.1 ASC 39..487 CDD:279230 108/535 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.820

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