DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and delm-1

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_501590.2 Gene:delm-1 / 184882 WormBaseID:WBGene00009073 Length:626 Species:Caenorhabditis elegans


Alignment Length:594 Identity:124/594 - (20%)
Similarity:213/594 - (35%) Gaps:196/594 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EGFITTYHE---YCRNTSIHGVQYLGEQERPFRERIFWLFVFL----ISIYGCSTLIQSAYTKWT 87
            ||.|:...|   :|..|::||.:.:.:.:|.| .::|||.:.|    :.||.|..|..|..:|  
 Worm    61 EGTISVKRETQHFCETTTMHGPKRIFKGKRIF-TKLFWLIMVLGSLGLLIYQCWILSASYLSK-- 122

  Fly    88 ETPVI--VSFAEKSTPVWNIPFPAVTVCSETKRVLKQKGKETTYADLYSQFSEDMRASRVFRPEN 150
              |::  |||.   .|...:.||:||||:              :..:...:.|.|..:....|:.
 Worm   123 --PIVSQVSFL---IPEDGMEFPSVTVCN--------------FTPIRKSYIEAMNRTGDVSPDM 168

  Fly   151 VSALEMEEFRTLLHVCNTQIIEEDIPLIAG-----------DDLDYFDVLQRMLPQF--DRYF-- 200
            ::.| |..|             .:||::.|           ::|..:   |.:.|.|  |::|  
 Worm   169 INYL-MNWF-------------TEIPILLGNTDQQSLNKGNEELREY---QSIHPNFTVDQFFMD 216

  Fly   201 --FYCRWLSRF----GE---CETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEPLEMEN 256
              |.|..|.:.    ||   |.:....|||..|.|:|.:                .|..|:    
 Worm   217 ASFDCSDLMKLCSFQGESFDCCSLASPTLTPVGKCFTLD----------------LSKSPM---- 261

  Fly   257 ISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRG-----P---VQG 313
                              :.:|.|      |.|:|:.|.|.:...|...:..|     |   |.|
 Worm   262 ------------------NKQTEP------GIRAGLSLTLDANLDEQFDSSTGIDALLPNSFVNG 302

  Fly   314 FKVGKFENVLLHAPDDVPQV-SKQFVRIPMGKEVLIAVKPNMITMSS---------------GIA 362
            |:      ..:|..|.:|.: |.::           .|.||.:..|:               ...
 Worm   303 FR------YFVHPKDTIPNLASDEY-----------TVSPNSVAYSAISKFRYVLLPPNDWGNCT 350

  Fly   363 EYHPVRRQCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGCVKFSMPRNVDMPVCGE-DKIHC 426
            |.:|...|..||          ||..||...|.|.:.:.:|||.........:...|.. :..:|
 Worm   351 EDYPYGIQSNLS----------YTSGNCLSLCKAKYFMNQCGCTPALYNIGNNFQECTPFETYNC 405

  Fly   427 YDRAERELLVREFKRVKALNAGRENSRSVE----SACNCMPACTSLVYNTEISQAN------FDL 481
            .:.:           :..||   |.:..:|    |...|...|.|.||..:.|..|      |:.
 Worm   406 VNNS-----------LSLLN---EETGKMEFQPPSCTRCGQQCDSQVYRADNSNGNQFSAGAFNY 456

  Fly   482 EEMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILS 546
            .....:....:::|    |....:.|:::...:....:.:...:|:.|:..||..|:|:|.|:::
 Worm   457 FNSKNSSWSVDYMK----SNFQMIRIFYRDMSYTEYNQVQDASITDLLSAIGGNMGMFLGGSVIT 517

  Fly   547 LVEMIYHFT 555
            :||:...|:
 Worm   518 IVELFLFFS 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 119/577 (21%)
delm-1NP_501590.2 ASC 73..524 CDD:279230 119/578 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.820

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