DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and acd-3

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_001257250.1 Gene:acd-3 / 182963 WormBaseID:WBGene00007775 Length:484 Species:Caenorhabditis elegans


Alignment Length:565 Identity:98/565 - (17%)
Similarity:171/565 - (30%) Gaps:244/565 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ITTYHEYCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTL--IQSAY-----------T 84
            :||||...|       .|..|   .:..||||..|    :..|.||  ||...           |
 Worm    36 LTTYHGMIR-------IYTSE---TWPSRIFWGVV----VVTCVTLFMIQGGVLLEFYNSHPTAT 86

  Fly    85 KWTETPVIVSFAEKSTPVWNIPFPAVTVC------SETKRVLKQKGKETTY--ADLYSQFSEDMR 141
            |..|..:..||           .|::::|      .:....|..:|.:..|  .|.:...|:.: 
 Worm    87 KIDEYRLPTSF-----------LPSISICPYGFKTDDNLFYLITQGDKDVYIPPDYWKNSSKQL- 139

  Fly   142 ASRVFRPENVSALEMEEFRTLLHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWL 206
                             .:.|.:.|.                   ||::.::...::...:|   
 Worm   140 -----------------LKRLSYKCE-------------------DVVESIMINPNQIIDFC--- 165

  Fly   207 SRFGECETFFRKTLTEEGICYTFNGLRATE-------IYRDDTYQYQ---HSGEPLEMENISSQH 261
                   ...|..:||.|.|:||...|..|       :..|.|..|.   || |..|:...|:| 
 Worm   166 -------ANSRTQITEIGKCFTFENWREFETNTLKIKLKSDFTKMYTAHIHS-EYYEVSRSSTQ- 221

  Fly   262 TAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLHA 326
             ||                   |..|:.:.:     ||:.|..:                     
 Worm   222 -AW-------------------LKPGSHAKL-----SFRIEEQH--------------------- 240

  Fly   327 PDDVPQVSKQFVRIPMGKEVLIAVKPNMITMSSGIAEYHPVRRQCFLS-HERSLR---FFKVYTE 387
              ::||.:....::..|:          |....|..|      ||.:: :::|..   ||..:|.
 Worm   241 --NLPQNNWGTCKVQTGE----------IYNHLGCLE------QCLVAGYDQSCHCSPFFNRFTR 287

  Fly   388 SNCQLECLANFTLTKCGCVKFSMPRNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAGRENS 452
            .:|.::.|.|       |.|..                                           
 Worm   288 FHCSIDELLN-------CPKLK------------------------------------------- 302

  Fly   453 RSVESACNCMPACTSLVYNTEISQANFDLEEMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITS 517
               |..|:|...|.|         .|:.|:.:       ..||.  .|.:|.::.:...:...:.
 Worm   303 ---EVPCDCPMQCYS---------QNYVLQPV-------SLLKS--RSNISTVTFHLNSNLLRSH 346

  Fly   518 KRSELYGMTEFLANCGGIFGLFMGFSILSLVEMIYHFTLRLFTNL 562
            ::.:.:...:.::..||:.|||:|.|.::|:|:..:....:|..|
 Worm   347 QQYKRFKQIDLMSYIGGVMGLFLGMSCVTLLEVFIYLFKTIFGTL 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 92/547 (17%)
acd-3NP_001257250.1 ASC 33..382 CDD:279230 96/554 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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