DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and acd-1

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_491295.2 Gene:acd-1 / 182852 WormBaseID:WBGene00016064 Length:635 Species:Caenorhabditis elegans


Alignment Length:592 Identity:114/592 - (19%)
Similarity:214/592 - (36%) Gaps:178/592 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RRKAGSVACEGFITTYHEYCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCS--TLIQSAY 83
            |:..|:|:.:.  .|.| :|..|::||.:.:.:.:|       |..:|.:.:..||  .||...:
 Worm    68 RKLEGTVSIKR--ETQH-FCETTTMHGPKRIFQGKR-------WATLFWLIMVSCSLGLLITQVF 122

  Fly    84 ---TKWTETPVI--VSFAEKSTPVWNIPFPAVTVCSETKRVLKQKGKETTYADLYSQFSEDMRAS 143
               :::...|.:  |||.....   .:.||.:|:|:     |....|  ||.:..::..|     
 Worm   123 ILASEYLSKPTVSDVSFLINED---GMDFPLITICN-----LNPIRK--TYVNEINKTGE----- 172

  Fly   144 RVFRPENVSALEMEEF-----------RTLLHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFD 197
              ..|..::.: |:.|           |..||..|     |::.|...:.|::         ..|
 Worm   173 --VSPPMINYM-MKWFTEIPTLIGGADRPTLHEGN-----EELKLYMKNHLNF---------TVD 220

  Fly   198 RYFF-----------YCRWLSRFGECETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEP 251
            .:|.           .|.:.....:|.|...:.||..|.|:|.:                     
 Worm   221 SFFMNSGFSCPDIFKLCSFQGEIFDCCTLSTEVLTPLGKCFTLD--------------------- 264

  Fly   252 LEMENISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRGP------ 310
            |.....:|.|.              :|.|      |.::|:.:.|.:..:|......|.      
 Worm   265 LSSSTKASMHK--------------QTEP------GIQAGLAITLDAHLEEQFDGSNGMDALFTN 309

  Fly   311 --VQGFKVGKFENVLLHAPDDVPQVSK-QFVRIPMGKEVLIAVKPNMITMSSGIAEYH---PVRR 369
              |.||:      ..:|.|:.:|.:|. :|           .|.||.:..|:..::.:   |..:
 Worm   310 SFVNGFR------YFVHPPNTIPHLSSDEF-----------TVSPNTVAFSAISSDRYVLLPTHQ 357

  Fly   370 --QCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGCVK--FSMPRNVDMPVCGE-DKIHCYDR 429
              .|..:....::....|:..||...|.|.|.:..|||..  :::..|  :..|.. :...|.| 
 Worm   358 WGNCTENFPDGIQSNLSYSSGNCLSLCKAKFYMENCGCTPALYNIENN--LKECTPYETTTCLD- 419

  Fly   430 AERELLVREFKRVKALNAGRENSRSVESACNCMPACTSLV---YNTEISQANFDLEEMLVAEGDT 491
               .:|.:..|....:.....|.::      |...|.|||   ||:..||         .:.|..
 Worm   420 ---NILAKPNKETGKIEFQTPNCKA------CAQQCNSLVYRAYNSYGSQ---------FSAGAF 466

  Fly   492 EFLK----EYPGSQM----SRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLV 548
            .:||    |:....|    ..::|:::...:....:.:...:|:.|::.||..|:|:|.|::::.
 Worm   467 HYLKSINPEWTDGHMRANFQMINIFYRDMSYTEYNQVQDASVTQLLSDIGGNMGMFLGMSVITIT 531

  Fly   549 EMIYHFT 555
            |:...|:
 Worm   532 EICLFFS 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 108/569 (19%)
acd-1NP_491295.2 ASC 83..536 CDD:279230 108/570 (19%)
deg-1 83..536 CDD:273309 108/570 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.820

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