DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and delm-2

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_491296.1 Gene:delm-2 / 182851 WormBaseID:WBGene00016063 Length:608 Species:Caenorhabditis elegans


Alignment Length:593 Identity:111/593 - (18%)
Similarity:207/593 - (34%) Gaps:159/593 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FRRRRKAGSVACEGFITTYHEYCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTLIQSA 82
            |:...:..||..|    |.| :|..|::||.:.:.:.:|  ...:|||.:...||....|.:...
 Worm    52 FKHAGETVSVERE----TQH-FCETTTMHGPKRIFQGKR--WATLFWLIMVCTSIGLLITQVCIL 109

  Fly    83 YTKWTETPVI--VSFAEKSTPVWNIPFPAVTVCSETKRVLKQKGKETTYADLYSQFSEDMRASRV 145
            .:.:...||:  |||.....   .|.||.:|:|:              :..:...|..:|..:..
 Worm   110 ASNYLSKPVVSDVSFLINEE---GIQFPQITICN--------------FTPIRKTFVNEMNKTGQ 157

  Fly   146 FRPENVSALE--MEEFRTLLHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYFFY------ 202
            ..|..::.:.  ..|...|:...|.|::.|     ...||..:   |:..|.|....|:      
 Worm   158 ISPNMINYIMHWFTEVPILIGSSNWQLLHE-----GNKDLQEY---QKNNPNFTVQGFFIDAGFS 214

  Fly   203 -------CRWLSRFGECETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGEPLEMENISSQ 260
                   |.:.....:|.:.....||..|.|||.:.|.:|:                     .|.
 Worm   215 CSDIFKLCSFQGETFDCCSISTPVLTPLGKCYTLDLLSSTK---------------------PSM 258

  Fly   261 HTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRGP--------VQGFKVG 317
            |.              :|.|      |.::|:.:.|.:..:|......|.        |.||:  
 Worm   259 HK--------------QTEP------GIQAGLAITLDAHLEEQFDGSNGMDALFTNSFVNGFQ-- 301

  Fly   318 KFENVLLHAPDDVPQVSK-QFVRIPMGKEVLIAVKPNMI---TMSSGIAEYHPVRR--QCFLSHE 376
                ..:|.|:.:|.:|. :|           .|.||.:   .:||...|..|..:  .|...:.
 Worm   302 ----YFVHPPNTIPHLSSDEF-----------TVTPNSVAYTAISSERFELLPTNKWGNCTEHYP 351

  Fly   377 RSLRFFKVYTESNCQLECLANFTLTKCGCVK--FSMPRNVDMPVCGEDKIHCYDRAERELLVREF 439
            ..::....|...||...|.|.|.:..|||..  ::..||:.         .|          ..|
 Worm   352 SGIKSDLPYLTGNCVSLCKAKFFMENCGCTPAVYNNERNLK---------EC----------TPF 397

  Fly   440 KRVKALN--AGRENSR-----SVESACNCMPACTSLVYNTEISQAN------FDLEEMLVAEGDT 491
            :.:..:|  .|..|:.     .:.....|...|.:|:|....||.|      |:    .....::
 Worm   398 ETLACVNNHNGSNNATGKLEFKLPRCAQCAQQCNNLIYRAFNSQGNQFSARAFE----WFRTNNS 458

  Fly   492 EFLKEYPGSQMSRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVEMIYHFTL 556
            .:...:..:....:.|:::........:.:...:::.|:|.||..|:|:|.|::::.|:..:|:.
 Worm   459 NWTMAHIKTNFQIIHIFYQDMSNTEYNQVQDASISDLLSNIGGNMGMFLGMSLITITEICLYFSK 523

  Fly   557 RLFTNLKR 564
            .::..:.:
 Worm   524 IIWLGISK 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 104/558 (19%)
delm-2NP_491296.1 ASC 68..520 CDD:279230 104/559 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.820

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