DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rpk and del-9

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_508622.2 Gene:del-9 / 182767 WormBaseID:WBGene00015957 Length:579 Species:Caenorhabditis elegans


Alignment Length:576 Identity:110/576 - (19%)
Similarity:200/576 - (34%) Gaps:197/576 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RNTS-IHGVQ--YLGEQERPFRERIFWLFVFLISIY----GCSTLIQSAYTKWTETPVIVS-FAE 97
            |.|| :||::  .|....   |.|:.|:.:.:::::    ||..::.    :::...::|| |.:
 Worm    84 RETSTLHGLRDVMLSSSG---RLRMVWVLIVILALFMTFQGCYQIMD----EYSMRRIVVSYFIQ 141

  Fly    98 KSTPVWNIPFPAVTVCSETKRVLKQKGKETTYADLYSQFSEDMRASRVFRPENVSALEMEEFRTL 162
            ::..:|   .|.|.||.                  |:      |.:|.|...|..:.|:.:|..|
 Worm   142 EAQSIW---VPDVVVCP------------------YN------RLNRSFIEANNVSFELAQFLEL 179

  Fly   163 ------LHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWLSRFG-ECETFFR--- 217
                  |...|.|..:|:| :...|.||:  .::.:|.|  ....|.::|.:.. .||.||.   
 Worm   180 SFPSMDLPFENIQQQQEEI-ISKIDTLDF--QIEILLEQ--NNMTYAQFLRKASLNCEAFFEDSR 239

  Fly   218 ------KTLTEEGICYTFNGLR----------------ATEIYRDDTYQYQHSGEPLEMENISSQ 260
                  :.:|..|.|:...|::                ..|.|.....|..:||..:::      
 Worm   240 RCANTTEIMTSAGKCFRMAGIKQEIAGFGNGDRYVIDLPEEYYNPGINQMINSGVIIKL------ 298

  Fly   261 HTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLH 325
                 .|.|..:|:|:...||.|                                         |
 Worm   299 -----AERGQGIDNDLTFLPAGV-----------------------------------------H 317

  Fly   326 APDDVPQVSKQFVRIPMGKEVLIAVKPNMITMSSGIAEY--HPVRRQCFLSHERSLRFFKVYTES 388
            |  .:|.:..||                         |:  .|.|.:|......:      |:..
 Worm   318 A--IMPLLGTQF-------------------------EFMNDPPRYECEEDPHGN------YSRV 349

  Fly   389 NCQLECLANFTLTKCGCVKFSMPRNVDMP--VCGEDKI-HCYDRAERELLVREFKRVKALNAGRE 450
            :|..:||.......|.|.. :..:|...|  :|...:: ||:       ..:.|.....|     
 Worm   350 HCFEDCLTLDAQQTCQCSP-AAAQNPAYPDKLCTATQLYHCF-------FTKLFPEDSNL----- 401

  Fly   451 NSRSVESAC--NCMPACTSLVYNTEISQANFDLEEMLVAEGDTEFLKEYPGSQMSR---LSIYFK 510
             |:::..||  .|...|.:..||.::|.::      :.:|...:.|......:|.|   |.||:.
 Worm   402 -SKAIVDACKKECKAPCHAWNYNKQVSYSS------IPSEASKKLLPREEWEKMKRKIILDIYYS 459

  Fly   511 QSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVEMIYH---FTLRLFTNLK 563
            :..:...|......::..:|..||.|.||.|.|::||.:::.:   :.:..|..||
 Worm   460 ELDYTIIKHVIAMPLSSLIAQIGGQFSLFAGGSLISLCQIVIYSVRYVMHKFCGLK 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 107/560 (19%)
del-9NP_508622.2 ASC 85..502 CDD:307141 106/560 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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