DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rpk and del-1

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_001355359.1 Gene:del-1 / 181534 WormBaseID:WBGene00000952 Length:694 Species:Caenorhabditis elegans


Alignment Length:630 Identity:119/630 - (18%)
Similarity:203/630 - (32%) Gaps:155/630 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EYCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTLIQSAYTKWTETPVIVSFAEKSTPV 102
            ::|..|:.|||..:..... :..|..|:.|.|:.|..|.........|:.....||:.   ....
 Worm    75 DFCEQTTFHGVNMIFTTSL-YWVRFLWVVVSLVCICLCMYSFSHVKDKYDRKEKIVNV---ELVF 135

  Fly   103 WNIPFPAVTVC--SETKRVLKQKGKETTYA-DLYSQ---FSEDMRASRVFRPENVSALEMEEFRT 161
            .:.||||:|||  :..|..|.:...|.:.. |.:.|   :|.|.....:......|..:...|:.
 Worm   136 ESAPFPAITVCNLNPFKNHLARSVPEISETLDAFHQAVVYSNDATMDELSGRGRRSLNDGPSFKY 200

  Fly   162 LLHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWLSRFGECETFFRKTLTEEGIC 226
            |.:    :.:..|...:.|..   ..:.|...|:.......|.:....|.....:.....|:.||
 Worm   201 LQY----EPVYSDCSCVPGRQ---ECIAQTSAPRTLENACICNYDRHDGSAWPCYSAQTWEKSIC 258

  Fly   227 YTFNGL-------------------------------RATEIYRDDTYQYQHSGEPLEMENISSQ 260
            ...|.:                               |...|:.....:....|.||..|.:.. 
 Worm   259 PECNDIGFCNVPNTTGSGNIPCYCQLEMGYCVFQPESRVRRIWEFQGNKIPEKGSPLRKEYMEQ- 322

  Fly   261 HTAWTLETGYALDSD---VET-------------FPARVLSAGARSGIFLALQS----------- 298
                ..:.||...:|   :.|             .|.|..:.|......:.:.|           
 Worm   323 ----LTQLGYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTE 383

  Fly   299 FKQEVDYA---C---------------RGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPM-GK 344
            ||..:|.:   |               .||..|.::..|.|    :.|.:|......|||.: ||
 Worm   384 FKLHIDPSFGNCYTFNANPEKKLASSRAGPSYGLRLMMFVN----SSDYLPTTEATGVRIAIHGK 444

  Fly   345 E------VLIAVKPNMITMSSGIA----------------EYHPVRRQCFLSHERSLRFFKVYTE 387
            |      ......|..:..|.||:                :.:|..|..:..::        |..
 Worm   445 EECPFPDTFGYSAPTGVISSFGISLRNINRLPQPYGNCLQKDNPQSRSIYKGYK--------YEP 501

  Fly   388 SNCQLECLANFTLTKCGCV--KFSMP--RNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAG 448
            ..|...|.....:.||||.  ::..|  |:..........::|        |..|..::..    
 Worm   502 EGCFRSCYQYRIIAKCGCADPRYPKPWKRSAWCDSTNTTTLNC--------LTTEGAKLST---- 554

  Fly   449 RENSRSVESACNCMPACTSLVYNTEISQANFDLEEMLVA-EGDTEFLKEYPGSQMSRLSIYFKQS 512
            :||.:.    |.|:..|....|.|..|.|.:....:..: :..::....|.....:.:.||::|.
 Worm   555 KENQKH----CKCIQPCQQDQYTTTYSAAKWPSGSIQTSCDNHSKDCNSYLREHAAMIEIYYEQM 615

  Fly   513 QFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVEMIYHFTLR 557
            .:...:.||.|.....:|:.||..|||:|.||:|::|.:: |.:|
 Worm   616 SYEILRESESYSWFNLMADMGGQAGLFLGASIMSVIEFLF-FAVR 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 117/622 (19%)
del-1NP_001355359.1 deg-1 75..656 CDD:273309 117/625 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 106 1.000 Domainoid score I4100
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100105
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.720

Return to query results.
Submit another query.