DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and LOC1270338

DIOPT Version :10

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:XP_061501996.1 Gene:LOC1270338 / 1270338 VectorBaseID:AGAMI1_009703 Length:242 Species:Anopheles gambiae


Alignment Length:255 Identity:52/255 - (20%)
Similarity:97/255 - (38%) Gaps:64/255 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 KVGKFENVL---LHAPDDVPQVSKQFVRIPMGKEVLIAVKPNMITMSSGIAEYHPVR-RQCFLSH 375
            |:..|.:::   :|:|.:|....:.|..:....| |:||...:.|:::...:...|| |:|:...
Mosquito     2 KLDMFRSIVSYTIHSPYEVSTSDQLFTHVEESDE-LVAVYSVLETVANERLKDLTVRQRKCYFYD 65

  Fly   376 E--RSLRFFKVYTESNCQLECLANFTLTKCGCVKFSMPRNVDMPVCGEDKIHCYDRAERELLVRE 438
            |  .:|:|   |:.:.|.:.|.|...|..|.|.....| ..:.|.|....:||..          
Mosquito    66 EAYENLQF---YSYNLCIMNCRAKRALAVCQCRPHFYP-FAEGPPCTVAGLHCLQ---------- 116

  Fly   439 FKRVKALNAGRENSRSVESACNCMPACTSL-VYNTEISQANFDLEEMLVAEGDTEFLKE------ 496
                      :....|.::.|.|:.:||.: .|...:|:..:      .|||...|..:      
Mosquito   117 ----------QHPGWSSDADCKCLKSCTDVGYYVASLSKTQW------TAEGGIPFTHKASLRWE 165

  Fly   497 --YPGSQMSRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFM---GFSILSLVEMI 551
              .|.:::.|:.|               :...:.|.:.||...||.   ||.:..::|.:
Mosquito   166 ILQPKTRLRRVLI---------------FSYEDLLVSVGGAIALFFGKNGFYLSKIIEFL 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:459966 52/255 (20%)
LOC1270338XP_061501996.1 None

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