DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and Asic1

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:NP_001276720.1 Gene:Asic1 / 11419 MGIID:1194915 Length:559 Species:Mus musculus


Alignment Length:592 Identity:112/592 - (18%)
Similarity:205/592 - (34%) Gaps:190/592 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SDSELDSSKGIDLTFRRRRKAGSVACEG----FITTYHEYCRNTSIHGVQYLGEQERPFRERIFW 64
            |:||.:..|        .:::|....||    .:..:...|   ::||..::..:..|...:..|
Mouse    38 SESEEEEEK--------EKESGMELDEGDSPRDLVAFANSC---TLHGASHVFVEGGPGPRQALW 91

  Fly    65 LFVFLISI--YGCSTLIQSAYTKWTETPVIVSFAEKSTPVWNIPFPAVTVCSETKRVLKQKGKET 127
            ...|:|::  :.|....:.||  :...|.:....|.:|.  .:.|||||.|:             
Mouse    92 AVAFVIALGAFLCQVGDRVAY--YLSYPHVTLLDEVATT--ELVFPAVTFCN------------- 139

  Fly   128 TYADLYSQFSEDMRASRVFRPENVSALEMEEFRTLLHVCNTQIIEED----IPL-------IAGD 181
                     :..:|.|::..|:            ||::.....::|.    :||       .:|:
Mouse   140 ---------TNAVRLSQLSYPD------------LLYLAPMLGLDESDDPGVPLAPPGPEAFSGE 183

  Fly   182 DLDYFDVLQRMLPQFDRYFFYCRWLSRFGECETF-FRKTLTEEGICYTFNGLRATEIYRDDTYQY 245
            ..:......|...:.:....||.:..  |.|... |....|..|.|||||.              
Mouse   184 PFNLHRFYNRSCHRLEDMLLYCSYCG--GPCGPHNFSVVFTRYGKCYTFNS-------------- 232

  Fly   246 QHSGEPLEMENISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQEVDYACRGP 310
            ...|.|             .|:|               :..|..:|:.:.|..  |:.:|.   |
Mouse   233 GQDGRP-------------RLKT---------------MKGGTGNGLEIMLDI--QQDEYL---P 264

  Fly   311 VQG------FKVGKFENVLLHAPDDVPQVSKQFVRIPMGKEVLIAVKP-------------NMIT 356
            |.|      |:.|  ..|.:|:.|:.|.:.:....:..|.:..::.:.             |.:|
Mouse   265 VWGETDETSFEAG--IKVQIHSQDEPPFIDQLGFGVAPGFQTFVSCQEQRLIYLPSPWGTCNAVT 327

  Fly   357 MSSGIAEYHPVRRQCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGCVKFSMPRNVDMPVCGE 421
            |.|.                    ||..|:.:.|:::|...:.:..|.|....||.  |.|.|..
Mouse   328 MDSD--------------------FFDSYSITACRIDCETRYLVENCNCRMVHMPG--DAPYCTP 370

  Fly   422 DKI-HCYDRAERELLVREFKRVKALNAGRENSRSVESACNCMPACTSLVYNTEISQANFDLEEML 485
            ::. .|.|.|...|:.::                 :..|.|...|....|..|:|...      :
Mouse   371 EQYKECADPALDFLVEKD-----------------QEYCVCEMPCNLTRYGKELSMVK------I 412

  Fly   486 VAEGDTEFL-------KEYPGSQMSRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFS 543
            .::...::|       ::|.|..:..|.|:|:...:.|.::.:.|.:...|.:.||..|||:|.|
Mouse   413 PSKASAKYLAKKFNKSEQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGAS 477

  Fly   544 ILSLVEM 550
            ||:::|:
Mouse   478 ILTVLEL 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 105/553 (19%)
Asic1NP_001276720.1 ASC 63..541 CDD:295594 105/559 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6420
eggNOG 1 0.900 - - E1_KOG4294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 91 1.000 Inparanoid score I5086
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8693
orthoMCL 1 0.900 - - OOG6_100105
Panther 1 1.100 - - O PTHR11690
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.870

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