DRSC/TRiP Functional Genomics Resources

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Protein Alignment rpk and scnn1d

DIOPT Version :10

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:XP_031762206.1 Gene:scnn1d / 100496702 XenbaseID:XB-GENE-991876 Length:604 Species:Xenopus tropicalis


Alignment Length:615 Identity:118/615 - (19%)
Similarity:204/615 - (33%) Gaps:192/615 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EGFITTYHE-------YCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTLIQSAYTKWT 87
            ||.|..|..       :|.||:|||...|........:..|||.::.::.         |...| 
 Frog    10 EGLIEFYDSFEDMLKFFCDNTTIHGTVRLNCSRENKMKTTFWLVLYFVAF---------AMMYW- 64

  Fly    88 ETPVIVSFAEKSTPVWNIP-------------FPAVTVCSETK----------RVLKQKGKETTY 129
                  .|.:.:...|..|             |||||:|:...          ..|.|..|||.|
 Frog    65 ------QFGQLTDQYWAYPTNTIIGLQSKGKIFPAVTICNLNPYRFDQVNMYINQLDQLAKETLY 123

  Fly   130 ADLYSQFSEDMRASRVFRPENVSALEMEEFRTLLHVCNTQIIEEDIPLIAGDDLDYFDVLQRM-- 192
              |..::..::       ||  |..::.:.:.||:....|.....|       ||...|||::  
 Frog   124 --LLYEYEYEV-------PE--SPQQVVDLQDLLNNVTGQFNGNFI-------LDQSIVLQKLQE 170

  Fly   193 ------LPQFDRYFFYCRWLSRFGEC-ETFFRKTLTEEGICYTFNGLR-----------ATEIYR 239
                  ||...::....:..:..|:| ..:|..........|.|:.:.           |....|
 Frog   171 NGSGPALPGQKKFKVGFKLCNSSGDCYYKWFWSGFDAVHEWYKFHYINIMSNIPAVLNIANNFSR 235

  Fly   240 D------------DTYQYQHSGEPL-----EMENISSQHTAWTLETG--YALDSDVET-----FP 280
            |            |..:|.|...|:     .:.|...:::.::...|  |.|...|:|     .|
 Frog   236 DYILTCHFNEMPCDEREYVHFHHPIYGNCFTINNHWKENSWYSSRPGKQYGLSIVVKTDLHDNMP 300

  Fly   281 ARVLSAGARSGIFLALQSFKQEVDYACRGPVQGFKVGKFENVLLHAPDDVPQVSKQFVRIPMGKE 345
            ....:||||                                :::|.|:..|.|..|...|..|.|
 Frog   301 LLSQAAGAR--------------------------------IMIHNPNQPPLVEHQGFDIRPGTE 333

  Fly   346 VLIAVKPNMITMSSGIAEYHPVRRQCFLSHERSLRFFKV-----YTESNCQLECLANFTLTKCGC 405
            ..|:||........|  :|    .||  :.:.|....|:     ||...|...|.....:..|||
 Frog   334 NSISVKQEEAIRLGG--KY----SQC--TSDGSDLGIKILYNTSYTMQACLNSCFQYKMIEVCGC 390

  Fly   406 VKFSMPRNVDMPVCGEDKI----HCYDRAERELLVREFKRVKALNAGRENSRSVESACNCMPACT 466
            ..:..|....|..|..:|.    :|:.:...::|                ..::.....|...|.
 Frog   391 GYYFYPLPPGMEYCNYNKHPDWGYCFYQLYEKML----------------DHTLICFTQCPKQCK 439

  Fly   467 SLVYN---------TEISQAN--FDLEEMLVAEGDTEFLKEYPGSQMSRLSIYFKQSQFITSKRS 520
            ...|:         :.:|:|.  ..|:|        .:......|.:|::::|:::..:.:.:.:
 Frog   440 QTEYHLSAGTAKWPSPVSKAKKLLSLQE--------RYNSTSKRSDISKINVYYEELSYRSVEET 496

  Fly   521 ELYGMTEFLANCGGIFGLFMGFSILSLVEM 550
            ....:|..|::.||::..:.|.|:||:.|:
 Frog   497 PSVSVTMLLSSMGGLWSWWFGSSVLSVAEI 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:459966 114/599 (19%)
scnn1dXP_031762206.1 ENaC 18..583 CDD:273304 114/607 (19%)

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