DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rpk and asic2

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:XP_004918663.1 Gene:asic2 / 100492214 XenbaseID:XB-GENE-6033380 Length:541 Species:Xenopus tropicalis


Alignment Length:605 Identity:127/605 - (20%)
Similarity:218/605 - (36%) Gaps:170/605 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LTFRRRRKAGSVACEGFIT--------------TYHEYC------RNTSIHGVQYLGEQERPFRE 60
            :|...|.:|.:.:|...:|              |.|.:.      ::..:||::|:...:..||.
 Frog     1 MTREERIRAPAGSCPSGVTRTDAHVVSQKCHTRTQHRHALSLPSLQHIKLHGLKYICSPKLAFRH 65

  Fly    61 RIFWLFVFLISIYGCSTLIQSAYTKWTETPVI--VSFAEKSTPV---WN--IPFPAVTVCSETKR 118
            |.||...|..|:        ..:..|:...::  :|| ...|.|   |:  :.|||||.|:....
 Frog    66 RTFWFLAFFTSL--------GFFLSWSSNRLLYWLSF-PSHTRVQLEWSKELAFPAVTFCNNNPV 121

  Fly   119 VLKQKGKETTYADLY--SQFSEDMRASRVFRPENVSAL---------EMEEFRTLLHVCNTQIIE 172
            ...:..|    :|||  ..:...:.|:|..||.....|         ::.:||..|...|     
 Frog   122 RFHRLSK----SDLYFAGYWLGLLFANRTARPMLAELLPEDRRKWFQKLADFRLFLPPRN----- 177

  Fly   173 EDIPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWLSRFGECETF-FRKTLTEEGICYTFNGLRATE 236
                 ..|..:.:.|   |:..|.:.....|::  |...|... |....|..|.||.||.     
 Frog   178 -----FDGISVGFMD---RLGHQLEDMLLSCKY--RGEACGPHNFSTVFTRYGKCYMFNS----- 227

  Fly   237 IYRDDTYQYQHSGEPLEMENISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFKQ 301
                     ...|.|:             |.|               :..||.:|:.:.|..  |
 Frog   228 ---------GQDGRPV-------------LTT---------------VKGGAGNGLEIMLDI--Q 253

  Fly   302 EVDYACRGPVQG------FKVGKFENVLLHAPDDVPQVSKQFVRIPMGKEVLIAVKPNMITMSSG 360
            :.:|.   |:.|      |:.|  ..|.:|:..:.|.:.:....:..|.:..:|.:...:|    
 Frog   254 QDEYL---PIWGDTEETTFEAG--VKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLT---- 309

  Fly   361 IAEYHPVRRQCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGCVKFSMPRNVDMPVCGEDKI- 424
               |.|.........|....||.||:.|.|:::|...:.:..|||....||.  |.|.|..::. 
 Frog   310 ---YLPSPWGACRFSELGSDFFPVYSISACRIDCETRYIVENCGCKMVHMPG--DAPFCTPEQYK 369

  Fly   425 HCYDRAERELLVREFKRVKALNAGRENSRSVESACNCMPACTSLVYNTEISQANFDLEEMLVAEG 489
            .|.:.| .:||..:       :.|.         |.|...|....||.|:|...      :.::.
 Frog   370 ECAEPA-LDLLAEK-------DGGN---------CVCTIPCNVTRYNKELSMVK------IPSKT 411

  Fly   490 DTEFL-------KEYPGSQMSRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSL 547
            ..::|       ::|....:..|.::|:...:.|.::.:.|.:...|.:.||..|||:|.|||::
 Frog   412 SAKYLEKKFNKSEKYILDNILVLDVFFEALNYETIEQRKAYEVAGLLGDIGGQMGLFIGASILTI 476

  Fly   548 VEMIYHFTLRLFTNLKRLVK 567
            :|        ||..:..|:|
 Frog   477 LE--------LFDYIYELIK 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 116/551 (21%)
asic2XP_004918663.1 ASC 49..497 CDD:383197 120/557 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.