DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rpk and asic4

DIOPT Version :9

Sequence 1:NP_001246909.1 Gene:rpk / 40580 FlyBaseID:FBgn0022981 Length:568 Species:Drosophila melanogaster
Sequence 2:XP_031749131.1 Gene:asic4 / 100486325 XenbaseID:XB-GENE-940165 Length:535 Species:Xenopus tropicalis


Alignment Length:546 Identity:99/546 - (18%)
Similarity:187/546 - (34%) Gaps:136/546 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 YCRNTSIHGVQYLGEQERPFRERIFWLFVFLISIYGCSTLIQSAYTKWTETPVIVSFAEKSTPVW 103
            :...:::||::::.:..|...::..|...||.|:......:......:.|.|.:.:..|:  .:.
 Frog    44 FASTSTLHGLRHIFQTGRLGIKQSLWALAFLASLLFFLYQVAKCALYYLEHPHVTAVDEE--VMG 106

  Fly   104 NIPFPAVTVCSETKRVLKQKGKETTYADLYSQFSEDMRASRVFRPENVSAL---EMEEFRTLLHV 165
            .:.|||:|:|:    :.:.:....|..|:|             ...|::.|   :.|..|     
 Frog   107 EMIFPAITICN----INRFRHSALTDPDIY-------------HLANLTGLPPKDREGHR----- 149

  Fly   166 CNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYFFYCRWLSRFGECETFFRKTLTEEGICYTFN 230
                  :.|:..   ||.|..|::.|...|.......|.:.......:. |....|..|.|||||
 Frog   150 ------DSDLMY---DDPDMLDIVNRTGHQLAEMLKSCNFSGDSCSAQN-FSVVFTRYGKCYTFN 204

  Fly   231 GLRATEIYRDDTYQYQHSGEPLEMENISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLA 295
            .                          ..:|                  |......|..:|:.:.
 Frog   205 A--------------------------DKKH------------------PKVSRQGGMGNGLEIM 225

  Fly   296 LQSFKQEVDYACRGPV------QGFKVGKFENVLLHAPDDVPQVSKQFVRIPMGKEVLIAVKPNM 354
            |..  |:.:|.   |:      ..|:.|  ..|.:|:.|:.|.:.:....:..|.:..::.:...
 Frog   226 LDI--QQEEYL---PIWRETNETSFEAG--IRVQIHSQDEPPYIHQMGFGVSPGFQTFVSCQEQR 283

  Fly   355 ITMSSGIAEYHPV---RRQCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGCVKFSMPRNVDM 416
            :|       |.|.   ..:..:..|..|..:..|:.|.|:|:|.....:.||.|....||.|  .
 Frog   284 MT-------YLPQPWGNCRSSIPGEEFLSGYSTYSISACRLQCEKEAVIRKCACRMVHMPGN--E 339

  Fly   417 PVCGEDKIHCYDRAERELLVREFKRVKALNAGRENSRSVESACNCMPACTSLVYNTEISQANFDL 481
            .:|......|.|.....::                 ......|:|...|....|:.|||...   
 Frog   340 TICSPVMYMCADHILDNMV-----------------EDTSEKCSCPTPCNLTRYSKEISMVR--- 384

  Fly   482 EEMLVAEGDTEFL-------KEYPGSQMSRLSIYFKQSQFITSKRSELYGMTEFLANCGGIFGLF 539
               :..:|...:|       :.|.......|.|:|:...:.|.::.:.|.:...|.:.||..|||
 Frog   385 ---IPNKGSARYLARKYNKNETYIRENFLVLDIFFEALNYETIEQKKAYDLPSLLGDIGGQMGLF 446

  Fly   540 MGFSILSLVEMIYHFTLRLFTNLKRL 565
            :|.|.|:::|::.:....:...:||:
 Frog   447 IGASFLTILEILDYMYEVIRDKVKRV 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rpkNP_001246909.1 ASC 39..552 CDD:279230 97/531 (18%)
asic4XP_031749131.1 ASC 39..514 CDD:413546 99/546 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 117 1.000 Domainoid score I5830
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 117 1.000 Inparanoid score I4647
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303969at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48391
Panther 1 1.100 - - O PTHR11690
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X60
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

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