DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LTK and Ltk

DIOPT Version :10

Sequence 1:NP_002335.2 Gene:LTK / 4058 HGNCID:6721 Length:864 Species:Homo sapiens
Sequence 2:NP_001101233.2 Gene:Ltk / 311337 RGDID:1309323 Length:577 Species:Rattus norvegicus


Alignment Length:555 Identity:444/555 - (80%)
Similarity:469/555 - (84%) Gaps:10/555 - (1%)


- Green bases have known domain annotations that are detailed below.


Human   310 AAAGGFGGGGGACTAGGGGGGYRGGDASETDNLWADGEDGVSFIHPSSELFLQPLAVTENHGEVE 374
            |||.|.|..|||.          |||.||:|.||||||||:||:|||.||:||||||||...|||
  Rat     5 AAAQGSGRRGGAA----------GGDTSESDLLWADGEDGISFVHPSGELYLQPLAVTEGDVEVE 59

Human   375 IRRHLNCSHCPLRDCQWQAELQLAECLCPEGMELAVDNVTCMDLHKPPGPLVLMVAVVATSTLSL 439
            ||||.|||||..:||||||||..|||:|||||||||||:||..|.....||::|.|||...||||
  Rat    60 IRRHPNCSHCSFKDCQWQAELWRAECICPEGMELAVDNITCTGLPTTTSPLIMMGAVVTALTLSL 124

Human   440 LMVCGVLILVKQKKWQGLQEMRLPSPELELSKLRTSAIRTAPNPYYCQVGLGPAQSWPLPPGVTE 504
            ||:|||||||.|||.|.|:..|||.||||||||||||||||||||||||||.|||:||||.|:||
  Rat   125 LMMCGVLILVNQKKCQSLRGTRLPGPELELSKLRTSAIRTAPNPYYCQVGLSPAQAWPLPQGLTE 189

Human   505 VSPANVTLLRALGHGAFGEVYEGLVIGLPGDSSPLQVAIKTLPELCSPQDELDFLMEALIISKFR 569
            |||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||.
  Rat   190 VSPANVTLLRALGHGAFGEVYEGLVIGLPGDSSPLPVAIKTLPELCSPQDELDFLMEALIISKFS 254

Human   570 HQNIVRCVGLSLRATPRLILLELMSGGDMKSFLRHSRPHLGQPSPLVMRDLLQLAQDIAQGCHYL 634
            |||||||||||.:|.||||||||||||||||||||||||.||.|||.|:||||||||||||||||
  Rat   255 HQNIVRCVGLSFQAAPRLILLELMSGGDMKSFLRHSRPHPGQLSPLTMQDLLQLAQDIAQGCHYL 319

Human   635 EENHFIHRDIAARNCLLSCAGPSRVAKIGDFGMARDIYRASYYRRGDRALLPVKWMPPEAFLEGI 699
            |||||||||||||||||||:|.||||||||||||||||:|||||:|.|.|||||||||||.|||:
  Rat   320 EENHFIHRDIAARNCLLSCSGDSRVAKIGDFGMARDIYQASYYRKGGRTLLPVKWMPPEALLEGL 384

Human   700 FTSKTDSWSFGVLLWEIFSLGYMPYPGRTNQEVLDFVVGGGRMDPPRGCPGPVYRIMTQCWQHEP 764
            |||||||||||||||||||||||||||.||||||||:..|.||||||.||||||||||||||.:|
  Rat   385 FTSKTDSWSFGVLLWEIFSLGYMPYPGHTNQEVLDFIATGNRMDPPRNCPGPVYRIMTQCWQLQP 449

Human   765 ELRPSFASILERLQYCTQDPDVLNSLLPMELGPTPEEEGTSGLGNRSLECLRPPQPQELSPEKLK 829
            ||||.|||||||:|||.||||||||.||||.||..||||.||.||||||.||.|:..|||.:.||
  Rat   450 ELRPDFASILERIQYCIQDPDVLNSPLPMEPGPIVEEEGASGPGNRSLEGLRSPKTLELSSQNLK 514

Human   830 SWGGSPLGPWLSSGLKPLKSRGLQPQNLWNPTYRS 864
            |.||..||..|.||||.|.||.|||||:|||||.|
  Rat   515 SRGGDLLGSQLPSGLKTLTSRCLQPQNIWNPTYGS 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LTKNP_002335.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 30..64
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..297
PTKc_ALK_LTK 503..779 CDD:270632 248/275 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 790..830 25/39 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 842..864 17/21 (81%)
LtkNP_001101233.2 PTKc_ALK_LTK 188..464 CDD:270632 248/275 (90%)
Blue background indicates that the domain is not in the aligned region.

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