DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 5-HT2A and htr2ab

DIOPT Version :9

Sequence 1:NP_730859.1 Gene:5-HT2A / 40575 FlyBaseID:FBgn0087012 Length:930 Species:Drosophila melanogaster
Sequence 2:XP_009300470.1 Gene:htr2ab / 559806 ZFINID:ZDB-GENE-120215-60 Length:458 Species:Danio rerio


Alignment Length:725 Identity:169/725 - (23%)
Similarity:248/725 - (34%) Gaps:327/725 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 LREVGSAEESFSNDSLLQAFQIELGAERDGLWSFLNLSELMEPDHGFLGIMNVTNTSLDMFLPNL 253
            ||.:|.:.|...:.|:.|  ::.||..                         |.|.|:|      
Zfish    10 LRSLGISAEISKDTSMEQ--KVSLGNA-------------------------VLNNSMD------ 41

  Fly   254 TALNTTSTASTADMATEFAVTKSFLDYSPHGYDFLFLFVVFFIFAGGLGNILVCLAVALDRKLQN 318
                  ...|.....:||    |..||....:..|.:.:|..|..  .|||||.:||:|:|||||
Zfish    42 ------CNGSEERNRSEF----SSSDYVQKNWVALLISLVIIITV--TGNILVIMAVSLERKLQN 94

  Fly   319 VTNYFLFSLAIADLLVSLFVMPMGAIPAFLGY-WPLGFTWCNIYVTCDVLACSSSILHMCFISLG 382
            .|||||.||||.|:|:.:.|||:..:....|| |||..|.|.|::..|||..::||:|:|.|||.
Zfish    95 ATNYFLRSLAITDMLLGILVMPVAMVTILYGYTWPLPRTLCPIWIYLDVLFSTASIMHLCAISLD 159

  Fly   383 RYMGIRNPLGSRHRSTKRLT--GIKIAIVWVMAMMVSSSITVLGLVNEKNIMPEPNICVINNRAF 445
            ||:.||||:  .|..:..||  .:||...|.:::::|..:.||||.:...:....: |.:.:..|
Zfish   160 RYIAIRNPI--HHSRSNSLTKARVKIIAAWTISVVISMPVPVLGLHDHSKVFRNES-CQLTDNNF 221

  Fly   446 FVFGSLVAFYIPMLMMVTTYALTIPLLRKKARFAAEHPESELFRRLGGRFTLRPQHSQQQLQMFS 510
            .:.||.|||::|:::||.||.|||..|:.:|....:            :..:||..|        
Zfish   222 VLIGSFVAFFVPLIIMVVTYFLTISALQSEATLCLD------------QLIVRPTWS-------- 266

  Fly   511 SFSGSNNKFLSMGDGNRNFNTEGEMEEGGAPSRRSGVEPAERPLMQQRTASSRSMGTVSFRNVVN 575
                               :|.|.:..|...|.|          :..|::..|            
Zfish   267 -------------------STIGLLPRGSVSSER----------LFSRSSICR------------ 290

  Fly   576 GTSGAA-GSGRRTTGTAHSSFRFSGAGIFRHSSSSPASSCHSTSTSRSSSFWRKHGGYPNLMDRL 639
              .||: |||||                                                     
Zfish   291 --EGASRGSGRR----------------------------------------------------- 300

  Fly   640 AIHLRLSLVPPSSHPNRRASVRVTISQPQLGYPTNVGGNGGRTVGATEVGAGGNGSSAGRTSNSS 704
                                                                             
Zfish   301 ----------------------------------------------------------------- 300

  Fly   705 LGGTSLMKIATIQGPILNQSQAAGGNHMVQKVKPTALKPEEPQRNKVRPFKFAFNRVATPTLNLR 769
                                                                             
Zfish   301 ----------------------------------------------------------------- 300

  Fly   770 FLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWSPFFILNIIFAACPE-CQVPEHVV---- 829
                       |..:::.||||:||||:||..||:.|.|||:.|::...|.. |.  |.:|    
Zfish   301 -----------SMQSISNEQKASKVLGVVFLLFVIMWCPFFVTNVMAVVCGSVCD--EDLVGGLM 352

  Fly   830 NTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLLKCNCKRSGRPLRYRSVTEGRGALSLCAPSALP 894
            |..:|:||:||.:||.|||:||:|:||||.|.::|......|||:.           :...:..|
Zfish   353 NVFVWVGYLSSAVNPFIYTLFNKTYRAAFARYMQCRYHEERRPLQL-----------ILVNTIPP 406

  Fly   895 LAISFQGAPL 904
            ||.|..|.||
Zfish   407 LAYSSSGLPL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
5-HT2ANP_730859.1 7tm_4 299..>428 CDD:304433 62/131 (47%)
7tm_1 302..>477 CDD:278431 78/177 (44%)
htr2abXP_009300470.1 7tm_4 69..>200 CDD:304433 60/134 (45%)
7tm_1 78..370 CDD:278431 126/553 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596402
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D408957at33208
OrthoFinder 1 1.000 - - FOG0001488
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X759
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.810

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