DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srl and Pprc1

DIOPT Version :9

Sequence 1:NP_649469.2 Gene:srl / 40562 FlyBaseID:FBgn0037248 Length:1067 Species:Drosophila melanogaster
Sequence 2:XP_006231513.1 Gene:Pprc1 / 294007 RGDID:1309688 Length:1639 Species:Rattus norvegicus


Alignment Length:867 Identity:203/867 - (23%)
Similarity:308/867 - (35%) Gaps:296/867 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 PILLNPPVATIVAKPGVPSSKPGDSDYDSDSIIDVETVDVLDMNMANIWSIDKPAKMGQTPDELR 317
            |.|..||..:.|:.|.:.|:..|.:       :...:|:              |:.....|.|  
  Rat   966 PGLQQPPFWSTVSPPPLSSASTGRA-------VPPPSVE--------------PSNSSAGPPE-- 1007

  Fly   318 YVDN--VKADPSWSPRSAKKTTPTIKENKPEQLGNHQLAVPASNKPKHKNICLVPNKKQCDFLKR 380
              |.  |...||.|.|.|....|..:..|.|     ...||.|.:||||             :..
  Rat  1008 --DTLPVPVTPSLSSRPASPIAPPAEPTKLE-----AQPVPVSPQPKHK-------------VSP 1052

  Fly   381 KVGSPSLSKLTKATTKKATESMSNKQPSVKNTQCTGLGLGGKNLSLLKQE------RDAALSVCA 439
            .|.||.:..|...:.:                   |:.:|......||.|      |:..:|. |
  Rat  1053 VVQSPQIKVLPTLSAE-------------------GVAIGESESERLKPETQENRPREKPIST-A 1097

  Fly   440 AKPIAPPTLSTTT--PTLTPPAKRKLNLEEYKQRRCGGVGAVYPKPTPPKQAKIEVA-------- 494
            .|.:..|..||..  |.:.|...|:|:.                .|||..|...:|.        
  Rat  1098 TKAVLLPKQSTVAKLPAVHPARLRRLSF----------------LPTPRAQGSEDVVQAFISEIG 1146

  Fly   495 -----------------AKRIAPTPV-----------SKPTPSPKK-------AEIVNIVNSLKC 524
                             ||:..|.|.           |..||..||       .|:.|:. .|..
  Rat  1147 IEASDLSSLLEQFEKSEAKKECPLPAPADSVAVGNSGSIDTPQEKKPLDRLHAPELANVA-GLTP 1210

  Fly   525 PRTEQSSL--PMDPITMAKNKVLRMLEMKRAQQLKIIDSRVSAKVPRVTKLPP-----LKDIVK- 581
            |.|....|  |:..:::          :.:|:..|......:.|...:|:..|     |::.|: 
  Rat  1211 PATPPHQLWKPLAAVSL----------LAKAKSPKSTAQEGTLKPEGITEAKPPAAACLQEGVRG 1265

  Fly   582 ----------DTYCMETEDPGTEIAPLSNKLHPDYEEIIIVS-------ASCNTDITIPP-NQLS 628
                      ..||:.:..|            |.....:::|       ...:.||||.| ..|.
  Rat  1266 PSPVHVGSGDHDYCVRSRTP------------PKKMPALVISEMGSRWNVKRHQDITIKPVLSLG 1318

  Fly   629 KASP--RSLLKSSVLLYNISNGQDANKN---MSNSLIASIQSEVARQTSNTTLSTIQSNATKVMS 688
            .|:|  .....|...|.:.::.:.|:.:   .:.|.:.|.::...|...||...:...:..:.|.
  Rat  1319 SAAPPLPCTTTSQEPLDHRTSSEQADPSAPCFAPSTLLSPEASPCRNEMNTRTPSEPPDKQRSMR 1383

  Fly   689 SADKNCQHGEDMVIMHLPKDRVRKTLVSIATQTDLQPEFPLLTLPPKRQSRERTRRNYRRRRTQG 753
            ...|.|:...                                  ||.        |.::.||.:.
  Rat  1384 CYRKACRSAS----------------------------------PPS--------RGWQGRRGRS 1406

  Fly   754 SGSNMSTSSSDFSSDCSSLVSHRSRSQYDSIDQLRNLDVAATCGGSIGNGGYSSRSTQRHRSSVS 818
            |.|..|.||....:..||.||..|||:..|:                     |..:.:..|||.|
  Rat  1407 SRSVSSGSSRTSEASSSSSVSSSSRSRSRSL---------------------SPPNKRWRRSSCS 1450

  Fly   819 SSSYSENGQYRRRQRRTSYNKRRSRNQKRGSTSSSCSGSEKSDRERSRSPHRKLRHSRSRSRSKS 883
            ||.         |.||.|            |:|||.|.|..|...|||||      |.|..| :|
  Rat  1451 SSG---------RSRRCS------------SSSSSSSSSSSSSSSRSRSP------SVSPCR-RS 1487

  Fly   884 DTRYPNNNSSSNNNNRRGFFDRNVSQP--AVEERRIVYVGRIEQETTKEILRRKFLPYGSIKQIT 946
            |.|...::..||::.:|    :.|.|.  |:||||:|::|:|....|:..|:::|..:|.|::.|
  Rat  1488 DRRRRYSSYRSNDHYQR----QRVLQKERAIEERRVVFIGKIPGRMTRSELKQRFSVFGEIEECT 1548

  Fly   947 IHYKENGMKYGFVTYERAQDAFTAIDTSH--RDSQISMYDISFGGRRAFCRSSYADLDNAGINNY 1009
            ||::..|..||||||..|::||.||::.|  |.:....:|:.|||||.||:.||:|||    :|.
  Rat  1549 IHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADEQPFDLCFGGRRQFCKRSYSDLD----SNR 1609

  Fly  1010 NSYVFPKEAPAPNVVEDSFEAL 1031
            ..:     .|||  |:..|::|
  Rat  1610 EDF-----DPAP--VKSKFDSL 1624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srlNP_649469.2 RRM <906..>975 CDD:223796 30/70 (43%)
RRM_PPARGC1A_like 914..1002 CDD:240803 39/89 (44%)
Pprc1XP_006231513.1 RRM_PRC 1516..1606 CDD:241068 39/89 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353068
Domainoid 1 1.000 56 1.000 Domainoid score I10733
eggNOG 1 0.900 - - E1_28IAX
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 111 1.000 Inparanoid score I4775
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto97331
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15528
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.940

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