DRSC/TRiP Functional Genomics Resources

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Protein Alignment srl and Ppargc1a

DIOPT Version :9

Sequence 1:NP_649469.2 Gene:srl / 40562 FlyBaseID:FBgn0037248 Length:1067 Species:Drosophila melanogaster
Sequence 2:XP_036020787.1 Gene:Ppargc1a / 19017 MGIID:1342774 Length:819 Species:Mus musculus


Alignment Length:959 Identity:212/959 - (22%)
Similarity:338/959 - (35%) Gaps:275/959 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 STNTIISEVDALGL------------SIDVNNFDLADFITKDDFAENLNACRKKESLQAQAQIKS 246
            |.:::.|:::...|            .:|::..|:.|..| |.|...|..|      ..|::|.|
Mouse     7 SQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDT-DSFLGGLKWC------SDQSEIIS 64

  Fly   247 NTLADVPILLNPPVATIVAKPGVPSSKPGDSDYDSDSI-IDVETVDVLDMNMANIWSIDKPAKMG 310
            |...:.|       |.|..|.        |.:.:::.: :..||:|.|.::...:.|.|......
Mouse    65 NQYNNEP-------ANIFEKI--------DEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGA 114

  Fly   311 QTPDELRYVDNVKADPSWSPRSAKKTTPTIKENKPEQLGNHQLAVPASNKPKHKNIC--LVPNKK 373
            .|.|.       :|.||..|..    ||..:|.:...|....|..||:.:..: |.|  |.....
Mouse   115 VTTDN-------EASPSSMPDG----TPPPQEAEEPSLLKKLLLAPANTQLSY-NECSGLSTQNH 167

  Fly   374 QCDFLKRKVGSPSLSKLTKATTKKATESMSNKQPSVKNTQCTGLGLGGKNLSLLK---------- 428
            ..:...|...:|::.|...:.:.||......::|  :...|:         .|||          
Mouse   168 AANHTHRIRTNPAIVKTENSWSNKAKSICQQQKP--QRRPCS---------ELLKYLTTNDDPPH 221

  Fly   429 ----QERDAALSVCAAK------------PIAPPTLSTTTPTLTP---------PAKRKLNLEEY 468
                :.|:::...||:|            ...|.|||.   .|||         |.:.| .:|..
Mouse   222 TKPTENRNSSRDKCASKKKSHTQPQSQHAQAKPTTLSL---PLTPESPNDPKGSPFENK-TIERT 282

  Fly   469 KQRRCGGVGAVYPKPTPPKQA----------KIEVAAKRIAPTPVSKPTPSPKKAEIVNIVNSLK 523
            ......|...:.|..|||.:|          |::.:.|.:.|.|..:...|             :
Mouse   283 LSVELSGTAGLTPPTTPPHKANQDNPFKASPKLKPSCKTVVPPPTKRARYS-------------E 334

  Fly   524 CPRT----------EQSSLPMDPITMAKNKVLRMLEMKRAQQLKIIDSRVSAKVPRVTKLPPLKD 578
            |..|          |||.|              ..::.::..|    ||  ....|.||.|.|:.
Mouse   335 CSGTQGSHSTKKGPEQSEL--------------YAQLSKSSGL----SR--GHEERKTKRPSLRL 379

  Fly   579 IVKDTYCMETEDPGTEIAPLSNKLHPDYEEIIIVSASC--------NTDI-------TIPPN-QL 627
            .....||.........:..:|.:|. |..::....|||        :||.       |:..: |:
Mouse   380 FGDHDYCQSLNSKTDILINISQELQ-DSRQLDFKDASCDWQGHICSSTDSGQCYLRETLEASKQV 443

  Fly   628 SKASPRSLLKSSVLLYNISNGQDANKNMSNSLIASIQSEVARQTSNTTLSTIQSNATKVMSSADK 692
            |..|.|..|:...:      ..:.||:..:...|....              :|:.|..:...|.
Mouse   444 SPCSTRKQLQDQEI------RAELNKHFGHPCQAVFDD--------------KSDKTSELRDGDF 488

  Fly   693 NCQHGEDMVIMHLPKDRVRKTLVSIATQTDLQPEFPLLTLPPKRQSRERTRRNYRRRRTQGSGS- 756
            :.:....:.:.      :...|.......|.:.|...|:.|                   ..|: 
Mouse   489 SNEQFSKLPVF------INSGLAMDGLFDDSEDESDKLSYP-------------------WDGTQ 528

  Fly   757 -----NMSTSSSDFSSDCSSLVS----------HRSRSQYDSIDQLRNLDVAATCGGSIGNGGYS 806
                 ::|.|.|.|:|.|...||          .|.||:..|..:.|          |.....| 
Mouse   529 PYSLFDVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHR----------SCSRSPY- 582

  Fly   807 SRSTQR---HRSSVSSSSYSENGQYRRRQRRTSYNKRRSRNQKRGSTSSSCSGSEKSDRER-SRS 867
            |||..|   .|||..|..|.|:..||.|..|.|....|||::...|........|..:.|| .|.
Mouse   583 SRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEAYEHERLKRD 647

  Fly   868 PHRKLRHSRSRSRSKSDTRYPNNNSSSNNNNRRGFFDRNVSQPAVEERRIVYVGRIEQETTKEIL 932
            .:||....|...|:|...|.                    .|.|:||||::|||:|..:||:..|
Mouse   648 EYRKEHEKRESERAKQRERQ--------------------KQKAIEERRVIYVGKIRPDTTRTEL 692

  Fly   933 RRKFLPYGSIKQITIHYKENGMKYGFVTYERAQDAFTAIDTSH--RDSQISMYDISFGGRRAFCR 995
            |.:|..:|.|::.|::.:::|..|||:||....|||.|::..:  |.|..:.:::.|.||:.|.:
Mouse   693 RDRFEVFGEIEECTVNLRDDGDSYGFITYRYTCDAFAALENGYTLRRSNETDFELYFCGRKQFFK 757

  Fly   996 SSYADLDNAGINNYNSYVFPKEAPAPNVVEDSFEALLLQVKAKL--NAG 1042
            |:|||||.      ||..|...:.........|::||.:.:..|  |.|
Mouse   758 SNYADLDT------NSDDFDPASTKSKYDSLDFDSLLKEAQRSLRRNLG 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srlNP_649469.2 RRM <906..>975 CDD:223796 28/68 (41%)
RRM_PPARGC1A_like 914..1002 CDD:240803 35/89 (39%)
Ppargc1aXP_036020787.1 RRM_PPARGC1A 674..764 CDD:410034 35/89 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849439
Domainoid 1 1.000 56 1.000 Domainoid score I10972
eggNOG 1 0.900 - - E1_28IAX
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8229
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006880
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15528
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5188
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.870

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