DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srl and ppargc1a

DIOPT Version :9

Sequence 1:NP_649469.2 Gene:srl / 40562 FlyBaseID:FBgn0037248 Length:1067 Species:Drosophila melanogaster
Sequence 2:XP_002936759.2 Gene:ppargc1a / 100491667 XenbaseID:XB-GENE-494718 Length:786 Species:Xenopus tropicalis


Alignment Length:931 Identity:200/931 - (21%)
Similarity:333/931 - (35%) Gaps:268/931 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 EVDALGLS-IDVNNFDLADFI----TKDDFAENLNACRKKESLQAQAQIKSNTLADVPILLNPPV 260
            ::..|.|| :|||:.|...|:    ...|.:||::.....||.....:|......::..:|...:
 Frog    30 DLPELDLSELDVNDLDADSFLGGLKWYSDQSENISNQYSSESSNIFEKIDEENEENLLAVLTETL 94

  Fly   261 ATI-VAKPGVPSSKPGDSDYDSDSIIDVETVDVLDMNMANIWSIDKPAKMGQTPDELR------- 317
            .:: |.:.|:||         .|::.|.:..:..|.:::::.....|.:..:.|..|:       
 Frog    95 DSLPVDEDGLPS---------FDALTDGDVTNEHDPSLSSMPDGTPPTQEAEEPSLLKKLLLAPA 150

  Fly   318 -----------YVDNVKADPSWSPRSAKKTTPTIKENKPEQLGNHQLAVPASNKPKHKNIC--LV 369
                       :.....|.||...|:......|  ||.            .||||  |.||  ..
 Frog   151 NAQLIYNECIGFTTQNHASPSQRIRTNSAVVKT--ENS------------WSNKP--KTICHSQK 199

  Fly   370 PNKKQCDFLKRKVGS---PSLSKLTKATTKKATESMSNKQPSVK-----NTQCTGLGLGGKNLSL 426
            |.::.|..|.:.:.|   |..:|.|::...:..:..|.|:|.::     ..:.|.|.|       
 Frog   200 PPRRPCSELLKYLTSNDDPPQTKSTESRNSRLDKCSSKKKPYLQPQPHYQARATSLSL------- 257

  Fly   427 LKQERDAALSVCAAKPIAP--PTLSTTTPTLTPPAKRKLNLEEYKQRRCGGVGAVYPKPTPPKQA 489
                           |:.|  |....::|..:...:|.|.:|      ..|...:.|..|||.:|
 Frog   258 ---------------PLTPESPNDPKSSPFESKTIERGLCME------LSGTAGLTPPTTPPHKA 301

  Fly   490 KIEVAAKRIAPTPVS--KPTPSPKKAEIVN------IVNSLKCPRTEQSSLPMDPITMAKNKVLR 546
            ..| ...|.:|...|  ...|..||:..:.      :..:.|.|  |||.|...   ::|..|:.
 Frog   302 NQE-NPFRTSPKLKSCKSSVPPAKKSRYIESSSIQVLYPAKKGP--EQSELYAQ---LSKATVVI 360

  Fly   547 MLEMKRAQQLKIIDSRVSAKVPRVTKLPPLKDIVKDTYC----------------------METE 589
            ..|.|:|                  |.|.|:......||                      :|.:
 Frog   361 GQEEKKA------------------KRPSLRLFGDHDYCQFMNSKSEIHISLSQELQASRHLECK 407

  Fly   590 D--PGTEIAPLSNKLHPDYEEIIIVSASCNTD---ITIPPNQLSKASPRSLLKSSVLLYNISNGQ 649
            |  ||.|:...|   :.|.|:       |..|   :|:|.:|.|.                    
 Frog   408 DPLPGKELKVCS---YTDQEQ-------CQKDSLPVTMPSSQNSH-------------------- 442

  Fly   650 DANKNMSNSLIASIQSEVARQTSNTTLSTIQSNATKVMSSADKNCQHGEDMVIMHLPKDRVRKTL 714
              .|.:.:.   .|::|:.:...:.| ..:.::.||:....|...   .|..:..||        
 Frog   443 --RKQLQDQ---EIRAELNKHFGHPT-QAVYNDETKISELVDNKY---SDEQLSRLP-------- 490

  Fly   715 VSIATQTDLQPEFPLLTLPPKRQSRERTRRNYRRRRTQGSGSNMSTSSSDFSSDCSSLVSHRSRS 779
            :.:....::...|       .....|..:..|....||      |.|..|.|..||:.   .|.|
 Frog   491 MFLTAGLEIDSLF-------DDSEDENDKLCYTWDETQ------SYSLFDESPSCSTF---NSPS 539

  Fly   780 QYDSIDQLRNLDVAATCGGSIGNGGYSSRSTQRHRSSVSSSSYSENGQYRRRQRRTSYNKRRSRN 844
            :| |:....:|.....|          |||..|..|...|||.|            .|::.|||:
 Frog   540 RY-SVSPPTSLFSQRIC----------SRSRSRSFSQFRSSSLS------------PYSRSRSRS 581

  Fly   845 QKRGSTSSSCSGSEKSD----------RERSRSP---------HRKLRHSRSRSRSKSDTRYPNN 890
            ....|:|.||...|...          |.|||||         :.:.:|.|.: |.:....|...
 Frog   582 PSSRSSSGSCCCYETDHCREKTSPMYARSRSRSPYGRRPRYDSYEEYQHERLK-REEYRKEYEKR 645

  Fly   891 NSSSNNNNRRGFFDRNVSQPAVEERRIVYVGRIEQETTKEILRRKFLPYGSIKQITIHYKENGMK 955
            .|.......|      ..|.|:||.|:::||::....::..||.:|..:|.|::.|::.:::|..
 Frog   646 ESERAKQRER------QRQKAIEEHRVIFVGKMRPNMSRAELRARFEVFGEIEECTVNLRDDGNC 704

  Fly   956 YGFVTYERAQDAFTAIDTSH--RDSQISMYDISFGGRRAFCRSSYADLDNAGINNYNSYVFPKEA 1018
            |||:||....|||.|::..:  |.|....:::.|..|:..|:|:|||||:      ||..|...:
 Frog   705 YGFITYRYTCDAFAALENGYTLRRSNEPDFEVCFCERKQVCKSNYADLDS------NSDDFDPAS 763

  Fly  1019 PAPNVVEDSFEALLLQVKAKL 1039
            .........|::||.:.:..|
 Frog   764 TKSKYDSMDFDSLLKEAQRSL 784

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srlNP_649469.2 RRM <906..>975 CDD:223796 23/68 (34%)
RRM_PPARGC1A_like 914..1002 CDD:240803 29/89 (33%)
ppargc1aXP_002936759.2 ABC_tran_Xtn 622..>660 CDD:378973 7/44 (16%)
RRM_PPARGC1A 663..753 CDD:241067 29/89 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10731
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006880
OrthoInspector 1 1.000 - - otm48671
Panther 1 1.100 - - O PTHR15528
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.100

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