DRSC/TRiP Functional Genomics Resources

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Protein Alignment lost and Mthfsd

DIOPT Version :9

Sequence 1:NP_649466.1 Gene:lost / 40559 FlyBaseID:FBgn0263594 Length:545 Species:Drosophila melanogaster
Sequence 2:XP_038954265.1 Gene:Mthfsd / 687539 RGDID:1584226 Length:414 Species:Rattus norvegicus


Alignment Length:432 Identity:123/432 - (28%)
Similarity:210/432 - (48%) Gaps:61/432 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TKRSLRVQTWKKIQEGKVGIGFNNIFNRIPSFVGADKAAALFANEEEFKKAQHIKVNIDRVLHEF 97
            :|:|:|.:.|..::...:......:.:|||:|.|:..|.....:.|.|...|.:||:.|:.|...
  Rat    31 SKQSIRERIWDYMESHNIADFPRPVHHRIPNFKGSYLAGQSIRDLEVFAGTQEVKVDPDKPLEGV 95

  Fly    98 KELALLADKSVYLPSTRESSALCLKVDVLADATEEQKKEALRVQDIQKFRSEIGLDSGLKLDIVV 162
            :.|||.:.|::.:|:.|..:.|..|:.....||::..::....|.::.|...:||||.:.:|:||
  Rat    96 RLLALQSRKTLLVPTPRLRTGLFNKIIPPPGATKDILRKCATSQGVRNFSVPVGLDSNVLVDLVV 160

  Fly   163 IGSVVVSREGYRIGRGNGFADLDIGLLIELGAITPKTIIVTIVHDMQVVDSLPPNLFQKYDTPVD 227
            :|||.||.:|:|||:|.|:|||:..:::.:||:...|::||||||.|||| :|..|.:.:|..||
  Rat   161 VGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVHEGTLVVTIVHDCQVVD-IPEALLEDHDLTVD 224

  Fly   228 IIATPTEIIRV----PKRLSFPNGVYWELLSERRLKILPVLQQLKEREEKAGKSISLKEEDTDVE 288
            .|.|||.:|..    ||    |.|:.|..:|...|..:|||:.|:|||::||..::|:.|..:.:
  Rat   225 YILTPTRVIATGCARPK----PTGILWSKVSCEMLTKIPVLRSLREREKRAGTDVTLQAEPGNTQ 285

  Fly   289 QHQNNRRRRGPVRRRIQRGNPGRTTSQTDNEQPQGETAQKRTPRRKGRFVNRRRRTTKSEGDQSG 353
            |                   |..:|.:...::||.:.|.. |.||                    
  Rat   286 Q-------------------PAPSTVRRPQDRPQSQPAPS-TVRR-------------------- 310

  Fly   354 VEAGAKTDDRKLPEAGTDERRSKKNKNSDFCIKLT----NLSRDIRVKDLKSELRKRECTPMSIS 414
                  ..||...:||...|.....:.:|..:..|    ||....||::||..|::....|:.::
  Rat   311 ------PQDRPQSQAGFRGRSHSSLEGTDTHLAATVCLGNLPYSARVRELKRALQELGAVPLRLT 369

  Fly   415 WKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLNDLSLTITTG 456
            |:|...:..||:.:..........:..:  .|.|.:|.::.|
  Rat   370 WQGPQHRAILHYTDSAAAQQAASLLQGL--RLGDNALRVSLG 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lostNP_649466.1 5-FTHF_cyc-lig 67..238 CDD:294257 64/170 (38%)
RRM_MTHFSD 384..455 CDD:240716 16/74 (22%)
MthfsdXP_038954265.1 5-FTHF_cyc-lig 32..229 CDD:412334 69/197 (35%)
RRM_SF 339..408 CDD:418427 16/70 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 133 1.000 Domainoid score I4942
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11245
Inparanoid 1 1.050 175 1.000 Inparanoid score I3965
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1137978at2759
OrthoFinder 1 1.000 - - FOG0006138
OrthoInspector 1 1.000 - - oto97153
orthoMCL 1 0.900 - - OOG6_105117
Panther 1 1.100 - - LDO PTHR13017
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4426
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.970

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