DRSC/TRiP Functional Genomics Resources

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Protein Alignment lost and mthfsd

DIOPT Version :9

Sequence 1:NP_649466.1 Gene:lost / 40559 FlyBaseID:FBgn0263594 Length:545 Species:Drosophila melanogaster
Sequence 2:NP_001038564.1 Gene:mthfsd / 566203 ZFINID:ZDB-GENE-030131-3513 Length:382 Species:Danio rerio


Alignment Length:431 Identity:119/431 - (27%)
Similarity:190/431 - (44%) Gaps:120/431 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TKRSLRVQTWKKIQEGKVGIGFNNIFNRIPSFVGADKAAALFANEEEFKKAQHIKVNIDRVLHEF 97
            ||..:|.:.|..|:...:......:.||||:|.||.:|....|..|.|.::..:||:.|:.:...
Zfish    12 TKWDVRHKVWNYIEVKNLANFPRPVHNRIPNFKGALEACNKVAQLEIFIESAVVKVDPDKPMEGV 76

  Fly    98 KELALLADKSVYLPSTRESSALCLKVDVLADATEEQKKEALRV----QDIQKFRSEIGLDSGLKL 158
            :..||.|.||:.:|:.|....|..::.....||    ||.|||    |.|::|...:|||..:::
Zfish    77 RLAALKARKSLLVPTPRLRFGLFNRITPPKGAT----KETLRVCSTSQGIKEFSVPVGLDDKVQV 137

  Fly   159 DIVVIGSVVVSREGYRIGRGNGFADLDIGLLIELGAITPKTIIVTIVHDMQVVDSLPPNLFQKYD 223
            |:||:|||.||.:|||||:|.||||::..::..:|::|..|.::|:|||.||:| :|..|.:::|
Zfish   138 DLVVVGSVAVSEKGYRIGKGEGFADMEYAMMACMGSVTESTWVITVVHDCQVMD-IPEELIERHD 201

  Fly   224 TPVDIIATPTEIIRVPKRLSFPNGVYWELLSERRLKILPVLQQLKEREEKAGKSISLKEEDTDVE 288
            ..||.|.|.|.:|:...:...|.|:.|.:|.:..||.:|:|::|:..|::|||.::|        
Zfish   202 LMVDFIITATRVIKTECKHPKPQGIIWSMLHKEELKKIPILKKLRTLEQEAGKDVAL-------- 258

  Fly   289 QHQNNRRRRGPVRRRIQRGNPGRTTSQTDNEQPQGETAQKRTPRRKGRFVNRRRRTTKSEGDQSG 353
                                                                             
Zfish   259 ----------------------------------------------------------------- 258

  Fly   354 VEAGAKTDDRKLPEAGTDERRSKKN-----------------KNSDFC-----------IKLTNL 390
                      ||..||.||.|..|.                 .|||.|           :.|:::
Zfish   259 ----------KLIHAGEDEYRKSKELQWQSHPKADLEFKCLASNSDRCSGFEPKFPTTTVYLSDI 313

  Fly   391 SRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 431
            ...:||.:||..||::|..|:.|.|:|...|.||.:.:..|
Zfish   314 PPALRVSELKGLLREQEVVPLQIRWQGAKRKAFLLYADFTG 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lostNP_649466.1 5-FTHF_cyc-lig 67..238 CDD:294257 66/174 (38%)
RRM_MTHFSD 384..455 CDD:240716 17/59 (29%)
mthfsdNP_001038564.1 5-FTHF_cyc-lig 17..214 CDD:294257 74/201 (37%)
RRM_MTHFSD 307..378 CDD:240716 16/48 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576383
Domainoid 1 1.000 124 1.000 Domainoid score I5477
eggNOG 1 0.900 - - E1_COG0212
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11245
Inparanoid 1 1.050 202 1.000 Inparanoid score I3724
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1137978at2759
OrthoFinder 1 1.000 - - FOG0006138
OrthoInspector 1 1.000 - - oto40758
orthoMCL 1 0.900 - - OOG6_105117
Panther 1 1.100 - - LDO PTHR13017
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9603
SonicParanoid 1 1.000 - - X4426
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.790

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