DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cont and nrcama

DIOPT Version :10

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:XP_005164693.1 Gene:nrcama / 556537 ZFINID:ZDB-GENE-041210-235 Length:1324 Species:Danio rerio


Alignment Length:1081 Identity:275/1081 - (25%)
Similarity:458/1081 - (42%) Gaps:166/1081 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 LDINDMERIPRGPYFVKQ-PNDTTFDVNKNRLINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQ 413
            ||...:|.:|:.|....| |.|...|..:|     :.:.|.|.|.|.||::|.|.   ....:.:
Zfish    34 LDSKVLEGLPQPPTITNQSPKDYIIDPREN-----INIFCEAKGKPHPSFSWTRN---GTHFDVE 90

  Fly   414 KIDPLAQDRYTISG-GNLI--IYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIMEFN---- 471
            | ||..   ..:.| |||:  |...|..:.:|.|.|:|.|:.|     ||..|...|.:..    
Zfish    91 K-DPKV---VMMPGTGNLVIDISGEKAEVYEGVYQCIARNEHG-----SAVSNNIVIRQSRSPLW 146

  Fly   472 LKRSAETSEMNWGKSIF--CDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVD 534
            .|...|...:..|.|:.  |.||...|....:|..:.|.. :.::.||..:.:|.||||.:...|
Zfish   147 SKEKNEPITVQRGTSLILQCRPPAGLPPPIIFWMDNNFQR-LPQNSRVSQALNGDLYFSNVIMED 210

  Fly   535 -RANYSC----------------TVQTL----VSDT-----------------GRNGPFF--PLR 559
             |.:|.|                ||:.|    ::||                 |...|.|  |  
Zfish   211 TRNDYICYARFPHTQTIQQKQPITVKVLDIEAMNDTVLAAFLNGSDFWGDSPSGERVPSFLHP-- 273

  Fly   560 VTPNSNYQALIFANTFPKVFPEAPVAGDEIRLECMAFGYPIPSYNWTRQG--LPLQRNAYTINYG 622
              |......::             :.||.:.|||:|.|.|.|:.:||:..  ||..|.:: .::.
Zfish   274 --PGMESTTMV-------------LKGDTLELECIADGLPTPNISWTKVNGELPSGRFSF-YSFQ 322

  Fly   623 RVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFTIPLKDMIKDYNSDVTFICEAFAI 687
            :.|.|:..|..|.|:|.|...|...:...:|.:.::..|.:....:::|..........|:....
Zfish   323 KTLKIKEVTEADGGDYRCIAKNRMGSSQHTITVVVRAAPFWISAPQNLILAPKETGNLTCDVDGN 387

  Fly   688 PDANYTWYKNAERLDPANINRDRYIIQDNVLTIKFLEKDKDDAMYQCGAQNQLKTSFSSAQLRVL 752
            |....||..|...::.::.:..|. :.|.|:|:..::.. ..|:|||.|.|......::|.:.||
Zfish   388 PKPTITWSVNGNPIESSHNDPSRK-VSDGVITLSDVQTG-SSAVYQCNASNDYGYLLANAFVSVL 450

  Fly   753 SMKPSFKKHPLESEVYAVYNGNTTIVCDPEAAPRPKFQWKKDGQVIGSGGHRRILPSGTLTISPT 817
            :..|.... .|..|...:.|....:.|....:|.||..|.||.|.|.:.....|..:|||.|:..
Zfish   451 AEPPRVLT-SLNHEYSVISNSRALLDCASFGSPLPKITWFKDSQSILNSDLYHIHKNGTLEINVA 514

  Fly   818 SRDDEGIYTCIASNQAGTDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHCEAAFDELLDIAY 882
            ...:.|.|||||||..|..|:|..:.|.:..|.|..|..:.|.:....:| .|:...|..|..:.
Zfish   515 QPQNSGKYTCIASNNLGNKENHVHLQVKEPTRIIRQPEYKEVQRNSIAVF-ECKVKHDPTLIPSM 578

  Fly   883 VW-KHNGEVLKNNHDGTGRIIVDWNRLTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGA--- 943
            :| |.|||:     ....|..|..:.||:|:.:..|.|.|.|:..:.:::.|:..::::..|   
Zfish   579 IWLKDNGEL-----PDDPRFEVGSDSLTIHDVTEDDEGTYTCIRNTTLDQDSASATLTVVEATPT 638

  Fly   944 -------PGAPGGVQVIQISKTKAIIEWVDGSHNGRAIRYYNILGRTNWNR--TWVNVSTHVQAR 999
                   |..|..:::....:....:.|..|..:...|:.:.|....:.:.  .|:|::      
Zfish   639 PTMILEQPDPPTDLELTDQRERSVRLTWTPGDEHNSPIKLFLIQYEDSLHEPGVWLNMT------ 697

  Fly  1000 EVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKI 1064
            ||...::..|.|   |:|:..|.|.|.|:|.:|:...|.||..|.|...||.:.|.:|...|...
Zfish   698 EVSGTSTTAQLE---LSPYVYYSFRVLALNGVGLSESSDPSRQYRTNPAKPDVNPSDVEVSGTSP 759

  Fly  1065 GDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKK-QDHMGVAVVNIPLNNYYTEYEVK 1128
            ..:||:|..|...|.:..|:.|||.|::|.|.:|.:..:.. ..|:   |...|.   :|.|||.
Zfish   760 DTMTISWRELSGLESNGPGLQYKVSWRMKDAEQWTTVTLANVSQHV---VTGTPT---FTLYEVT 818

  Fly  1129 VQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSRENIRGKLIGHRL 1193
            |||:|..|:||..|:.:.:|.|:.|.|||:.......:.|...|.|:.:.:|  ::||     ||
Zfish   819 VQAVNDYGEGPRPEVVLGYSGENSPTVAPENVKVSVQSGTEAEVHWEAVPLS--SVRG-----RL 876

  Fly  1194 KYWKTTHQEEDSVYYLSRTTRNWALIV-----------GLQPDTYYFVKVMAYNAAGEGPESERF 1247
            |.:|.|:|:..|::.......|..:::           .|.|.::|.:.:.|:|..|:||.|...
Zfish   877 KGYKVTYQKMRSLHKQDYDRENPQVLIFSGEETVGRLPDLHPYSHYRLNIRAFNGHGDGPSSTDQ 941

  Fly  1248 EERTYRKAPQKPPSSVHVYGINPSTVRVVWRYVSPSQDEEPVEGYKVRIWESD---------QNM 1303
            :.:|....| .||::|::..:|..::.|.|  ..|.:|...:.||.::....:         :.:
Zfish   942 QFQTPEGVP-GPPTNVNIRNLNLDSLLVEW--TPPLEDNGHLTGYLLKYQPINTTEEAGLLKEVL 1003

  Fly  1304 ITANNTIVPIGQKLESY-INNLTPGKSYNMRVLAYSNGGDG 1343
            :.||.|         || ::.||....|...:.|.:..|.|
Zfish  1004 LPANET---------SYTLDKLTHSTHYKFFLNAMTETGSG 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..466 CDD:472250 32/108 (30%)
Ig strand B 384..388 CDD:409356 0/3 (0%)
Ig strand C 397..409 CDD:409356 3/11 (27%)
Ig strand E 428..432 CDD:409356 3/5 (60%)
Ig strand F 443..448 CDD:409356 2/4 (50%)
Ig strand G 457..460 CDD:409356 0/2 (0%)
Ig 474..559 CDD:472250 29/126 (23%)
Ig strand B 485..489 CDD:409392 1/5 (20%)
Ig strand C 499..503 CDD:409392 0/3 (0%)
Ig strand E 523..527 CDD:409392 2/3 (67%)
Ig strand F 537..542 CDD:409392 2/20 (10%)
Ig strand G 553..556 CDD:409392 1/2 (50%)
Ig_3 584..644 CDD:464046 21/61 (34%)
Ig_3 660..738 CDD:464046 16/77 (21%)
Ig 756..844 CDD:472250 29/87 (33%)
Ig strand B 775..779 CDD:409358 0/3 (0%)
Ig strand C 788..792 CDD:409358 1/3 (33%)
Ig strand E 810..814 CDD:409358 3/3 (100%)
Ig strand F 824..829 CDD:409358 3/4 (75%)
Ig strand G 837..840 CDD:409358 1/2 (50%)
Ig <868..944 CDD:472250 19/86 (22%)
Ig strand C 881..885 CDD:409359 1/4 (25%)
Ig strand E 906..910 CDD:409359 1/3 (33%)
Ig strand F 920..925 CDD:409359 2/4 (50%)
Ig strand G 933..936 CDD:409359 1/2 (50%)
FN3 944..1043 CDD:238020 23/100 (23%)
FN3 1053..1146 CDD:238020 31/93 (33%)
fn3 1156..1244 CDD:394996 24/98 (24%)
fn3 1259..1346 CDD:394996 21/95 (22%)
nrcamaXP_005164693.1 Ig 46..139 CDD:472250 32/109 (29%)
Ig strand B 64..68 CDD:409458 0/3 (0%)
Ig strand C 77..81 CDD:409458 1/3 (33%)
Ig strand E 102..106 CDD:409458 3/3 (100%)
Ig strand F 119..124 CDD:409458 2/4 (50%)
Ig strand G 133..136 CDD:409458 1/2 (50%)
Ig 148..238 CDD:472250 23/90 (26%)
Ig strand B 162..166 CDD:409432 0/3 (0%)
Ig strand C 176..180 CDD:409432 0/3 (0%)
Ig strand E 199..203 CDD:409432 2/3 (67%)
Ig strand F 214..219 CDD:409432 2/4 (50%)
Ig strand G 230..233 CDD:409432 0/2 (0%)
Ig3_L1-CAM_like 276..358 CDD:409394 23/95 (24%)
Ig strand B 288..292 CDD:409394 1/3 (33%)
Ig strand C 301..305 CDD:409394 0/3 (0%)
Ig strand E 323..327 CDD:409394 1/3 (33%)
Ig strand F 337..342 CDD:409394 2/4 (50%)
Ig strand G 350..353 CDD:409394 0/2 (0%)
Ig 362..450 CDD:472250 17/89 (19%)
Ig strand B 378..382 CDD:409454 0/3 (0%)
Ig strand C 391..395 CDD:409454 1/3 (33%)
Ig strand E 415..419 CDD:409454 1/3 (33%)
Ig strand F 429..434 CDD:409454 3/4 (75%)
Ig strand G 442..445 CDD:409454 0/2 (0%)
I-set 466..541 CDD:400151 26/74 (35%)
Ig strand B 472..476 CDD:409544 0/3 (0%)
Ig strand C 485..489 CDD:409544 1/3 (33%)
Ig strand E 507..511 CDD:409544 3/3 (100%)
Ig strand F 521..526 CDD:409544 3/4 (75%)
Ig strand G 534..537 CDD:409544 1/2 (50%)
Ig 546..632 CDD:472250 23/91 (25%)
Ig strand B 562..566 CDD:409390 1/4 (25%)
Ig strand C 577..581 CDD:409390 0/3 (0%)
Ig strand E 599..602 CDD:409390 1/2 (50%)
Ig strand F 612..617 CDD:409390 2/4 (50%)
Ig strand G 625..628 CDD:409390 1/2 (50%)
FN3 646..736 CDD:238020 22/98 (22%)
FN3 748..834 CDD:238020 31/91 (34%)
fn3 846..938 CDD:394996 24/98 (24%)
fn3 951..1036 CDD:394996 21/96 (22%)
fn3 1096..1157 CDD:394996
Bravo_FIGEY 1212..1300 CDD:464016
Blue background indicates that the domain is not in the aligned region.

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