DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cont and cntn1b

DIOPT Version :10

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_001014814.1 Gene:cntn1b / 541474 ZFINID:ZDB-GENE-041210-236 Length:1031 Species:Danio rerio


Alignment Length:1141 Identity:312/1141 - (27%)
Similarity:488/1141 - (42%) Gaps:189/1141 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 MFMPAYEIELNLFICESKVLYSSDNVNIKLDDKRPYHYGLDINDMERIPRGPYFVKQPNDTTFDV 375
            |..|...:.|:||.|   ....:..:..::.:.|       |.|.|....||.|.::|.||.:..
Zfish     1 MATPGPAMLLSLFSC---FFLLAAAIKPRIFEPR-------IFDKEATGFGPIFEEEPLDTVYAE 55

  Fly   376 NKNRLINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLAQ--DRYTISGGNLIIYEPKQA 438
            :...  |.::::|.....|.....|:        |...:|..:.|  :.:::.||||:|..|::.
Zfish    56 DSPE--NKISMNCRVRANPPAIIKWW--------LNNWQIKLMEQPDEHFSLVGGNLVITNPEKN 110

  Fly   439 LDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNL-KRSAETSEMNWGKSIFCDPPQHYPD-VRYY 501
            ...|.|.|||:|.:|.:.|:.|::.||::.:|.. :|.....:...|..:.|.||..||| |.:.
Zfish   111 KHAGKYVCVAKNVYGTVMSKEANVKFGYLNQFPTDEREPVNVKEGQGAVLLCTPPSRYPDEVMFR 175

  Fly   502 WARDYFPNFVEEDQRVFVSRD-GALYFSFIETVDRANYSCTVQTLVSDTGRNGPFFPLRVTPN-- 563
            |..:.||||:..|||.|||:. |.||.:.:|..|..||||.|.:  ...|::....|:.:.|.  
Zfish   176 WIYNDFPNFIIPDQRRFVSQSTGNLYIAKVEPSDVGNYSCFVSS--PTIGKSVFSMPIALIPQIE 238

  Fly   564 ---SNYQALIFANTFPKVFPEAPVAGDEIRLECMAFGYPIPSYNWTRQGLPLQRNAYTINYGRVL 625
               ..|.|.|... |||.:   .:....|.|||.|.|.|:|...|.:....|..|......|.:|
Zfish   239 KEVKRYPADIRVK-FPKTY---ALVHQNITLECFALGNPLPHIRWRKLDADLPPNYEVSMNGALL 299

  Fly   626 IIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFTIPLKDMIKDYNSDVTFICEAFAIPDA 690
            .:.|....|.|.|.|...|.:.......::.::..|::...:.|..||..|::|..|.|...|..
Zfish   300 HLINVQYEDEGSYECETLNVKGMDWYRQWLYVEGPPEWAEHINDTEKDVGSELTLRCVAVGKPIP 364

  Fly   691 NYTWYKNAERLDPANINRDRYIIQDNVLTIKFLEKDKDDAMYQCGAQNQLKTSFSSAQLRVLSMK 755
            ...|.|            |.|......|....|..: |..||||.|:|:..|.:::|:|||:|..
Zfish   365 WIRWLK------------DGYSYGKGELKFSSLTFE-DSGMYQCIAENEWGTIYANAELRVVSCA 416

  Fly   756 PSFKKHPLESEVYAVYNGNTTIVCDPEAAPRPKFQWKKDGQVIGSGGHRRILPSGTLTISPTSRD 820
            |:|..:|::..:....||...|.|:|.|||:|:|.||:..:::.:.....|...|:|.|...::.
Zfish   417 PTFIYNPVKKILLGAENGRVVIECNPRAAPKPRFIWKRGSELLSNSSRIFIWDDGSLEILNATKS 481

  Fly   821 DEGIYTCIASNQAGTDESHARVIVLQEIRFIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVW- 884
            |||.|||.|.|..|...| ...:.:.|...|...|....:...|.|.|.|.|::|..||:.::| 
Zfish   482 DEGSYTCYAENDRGKSNS-TGTLTITEATKITVGPSNSEAAVGDTIVLQCSASYDPSLDVTFIWT 545

  Fly   885 ------------KHNGEVLKNNHDGTGRIIVDWNRLTVHNTSMRDAGDYECVVKSAVNEISSKTS 937
                        :|  ..|..:|:.:|.::       :.|..:|.||.|.|..::.|:..:::..
Zfish   546 VDSYSINFYTDFEH--YELDMDHENSGDLL-------IKNIQIRHAGHYICTAQTIVDNATAEAD 601

  Fly   938 VSIEGAPGAPGGVQVIQISKTKAIIEWVDGSHNGRAI-------RYYNILGRTNWNR-----TWV 990
            |.:.|.||.||||:|.:|..|...|.|..||.:|..:       |.:..|...:|..     .::
Zfish   602 VFVRGLPGPPGGVRVEEIGDTSVKIRWCLGSDHGSPLIQHIVQTRDFYALDPEDWKTATTTPAFL 666

  Fly   991 NVSTHVQAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPR 1055
            |.||             :.|.||:|.||..|||.|.|:|:.|.|..|.||....|::.:|.:||.
Zfish   667 NGST-------------ESATVVDLYPWMQYEFRVHAINEFGAGENSRPSIKIKTWDARPTVAPS 718

  Fly  1056 NVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLNN 1120
            :|.|..|..|:|.:||:|:.||........|.|.:|.....||.           .:.|..|...
Zfish   719 DVIGQVGISGELIVTWNPVKPQFFFGKKFGYVVAFKQHEDYEWK-----------WSTVEDPETR 772

  Fly  1121 YY---------TEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQP 1176
            .|         ||.::||...|:.|:||.|.|:|::|....|..||....|....||...|.|.|
Zfish   773 RYVYKESMTPDTEIQIKVSTFNNKGEGPASLISVVYSPRIAPTEAPLDVYARQVTSTEALVWWLP 837

  Fly  1177 --------IDMSRENIRGKLIGHRLKYWKTTHQEEDSVYYLSRT----TRNWALIVGLQPDTYYF 1229
                    :|           |::::||:   :.:|:....||.    |.|...:..::||::|.
Zfish   838 VYQAPPMWVD-----------GYQIRYWR---KYDDNEAAASRVIVHRTVNQTRLENMRPDSHYL 888

  Fly  1230 VKVMAYNAAGEGPESERFEERTYRKAPQKPPSSVHVY---GINPSTVRVVWRYVSPSQDEEPVEG 1291
            ::|.|:|.||.||.||..|..|.|..|.:   .:.||   ......:.:.|.::....:|..|||
Zfish   889 IEVRAFNGAGLGPPSEHCEMFTRRPPPSR---RLRVYKYVSFTRKWLYLYWDHIYNYWNESYVEG 950

  Fly  1292 YKVRIWESDQNMITANNTIVPIGQKLESYINNLTPGK-----------SYNMRVLAYSNGGDGRM 1345
            ||:...:..                 |.|....|.|:           .|.:.:.|...||||.:
Zfish   951 YKILFRKEG-----------------ERYGKLYTTGRHYIDFPMPETGDYVIELRARCEGGDGPI 998

  Fly  1346 SSPTLHFQMGKTTRNGANTRHGHNINTALILSTLLL 1381
            |...:   .||.         ...:.:..::|.|||
Zfish   999 SQIRV---QGKA---------AVGVESVSVVSVLLL 1022

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..466 CDD:472250 29/106 (27%)
Ig strand B 384..388 CDD:409356 0/3 (0%)
Ig strand C 397..409 CDD:409356 1/11 (9%)
Ig strand E 428..432 CDD:409356 3/3 (100%)
Ig strand F 443..448 CDD:409356 2/4 (50%)
Ig strand G 457..460 CDD:409356 1/2 (50%)
Ig 474..559 CDD:472250 32/86 (37%)
Ig strand B 485..489 CDD:409392 0/3 (0%)
Ig strand C 499..503 CDD:409392 0/3 (0%)
Ig strand E 523..527 CDD:409392 2/3 (67%)
Ig strand F 537..542 CDD:409392 4/4 (100%)
Ig strand G 553..556 CDD:409392 0/2 (0%)
Ig_3 584..644 CDD:464046 18/59 (31%)
Ig_3 660..738 CDD:464046 21/77 (27%)
Ig 756..844 CDD:472250 29/87 (33%)
Ig strand B 775..779 CDD:409358 1/3 (33%)
Ig strand C 788..792 CDD:409358 1/3 (33%)
Ig strand E 810..814 CDD:409358 2/3 (67%)
Ig strand F 824..829 CDD:409358 3/4 (75%)
Ig strand G 837..840 CDD:409358 1/2 (50%)
Ig <868..944 CDD:472250 20/88 (23%)
Ig strand C 881..885 CDD:409359 1/16 (6%)
Ig strand E 906..910 CDD:409359 0/3 (0%)
Ig strand F 920..925 CDD:409359 2/4 (50%)
Ig strand G 933..936 CDD:409359 0/2 (0%)
FN3 944..1043 CDD:238020 37/110 (34%)
FN3 1053..1146 CDD:238020 30/101 (30%)
fn3 1156..1244 CDD:394996 27/99 (27%)
fn3 1259..1346 CDD:394996 19/100 (19%)
cntn1bNP_001014814.1 Ig 41..138 CDD:472250 29/106 (27%)
Ig strand B 62..66 CDD:409353 0/3 (0%)
Ig strand C 75..79 CDD:409353 0/3 (0%)
Ig strand E 100..104 CDD:409353 3/3 (100%)
Ig strand F 115..120 CDD:409353 2/4 (50%)
Ig strand G 129..132 CDD:409353 1/2 (50%)
Ig 146..234 CDD:472250 32/89 (36%)
Ig strand B 158..162 CDD:409353 0/3 (0%)
Ig strand C 173..177 CDD:409353 0/3 (0%)
Ig strand E 198..202 CDD:409353 2/3 (67%)
Ig strand F 212..217 CDD:409353 4/4 (100%)
Ig strand G 228..231 CDD:409353 0/2 (0%)
Ig 245..332 CDD:472250 24/90 (27%)
Ig strand B 263..267 CDD:409353 2/3 (67%)
Ig strand C 276..280 CDD:409353 0/3 (0%)
Ig strand E 297..301 CDD:409353 1/3 (33%)
Ig strand F 311..316 CDD:409353 2/4 (50%)
Ig strand G 324..327 CDD:409353 0/2 (0%)
Ig 336..412 CDD:472250 24/88 (27%)
Ig strand B 352..356 CDD:409353 1/3 (33%)
Ig strand C 365..369 CDD:409353 0/3 (0%)
Ig strand E 378..382 CDD:409353 1/3 (33%)
Ig strand F 392..397 CDD:409353 4/4 (100%)
Ig strand G 405..408 CDD:409353 0/2 (0%)
Ig 417..505 CDD:472250 29/88 (33%)
Ig strand B 436..440 CDD:409353 1/3 (33%)
Ig strand C 449..453 CDD:409353 1/3 (33%)
Ig strand E 471..475 CDD:409353 2/3 (67%)
Ig strand F 485..490 CDD:409353 3/4 (75%)
Ig strand G 498..501 CDD:409353 1/3 (33%)
Ig 507..608 CDD:472250 25/109 (23%)
Ig strand B 526..530 CDD:409353 2/3 (67%)
Ig strand C 541..545 CDD:409353 0/3 (0%)
Ig strand E 570..574 CDD:409353 1/10 (10%)
Ig strand F 584..589 CDD:409353 2/4 (50%)
Ig strand G 597..600 CDD:409353 0/2 (0%)
FN3 608..708 CDD:238020 37/112 (33%)
FN3 716..808 CDD:238020 31/102 (30%)
fn3 817..903 CDD:394996 27/99 (27%)
Blue background indicates that the domain is not in the aligned region.

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