DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cont and L1cam

DIOPT Version :10

Sequence 1:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster
Sequence 2:NP_059041.2 Gene:L1cam / 50687 RGDID:619777 Length:1255 Species:Rattus norvegicus


Alignment Length:1115 Identity:267/1115 - (23%)
Similarity:472/1115 - (42%) Gaps:200/1115 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 WMFMPAYEIELNLFICESKVLYSSDNVNIKLDDKRPYHYGLDINDMERIPRGPYFVKQPNDTTFD 374
            |..:|       |.:|...:|       |::.|:...|:.|:         .|...:|       
  Rat     6 WYVLP-------LLLCSPCLL-------IQIPDEYKGHHVLE---------PPVITEQ------- 40

  Fly   375 VNKNRLI----NDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLA--------QDRYTISG 427
             :..||:    :|::|.|.|.|.|...:.|.:     |.:.::..:.|.        ...:||.|
  Rat    41 -SPRRLVVFPTDDISLKCEARGRPQVEFRWTK-----DGIHFKPKEELGVVVHEAPYSGSFTIEG 99

  Fly   428 GNLIIYEPKQALDQGAYHCVAENKFGRIRSESAHLNFGFIMEFNLKRSAET---SEMNWGKSIF- 488
            .|.....     .||.|.|.|.|..|...|....|    :.|...|...||   .|:..|:|:. 
  Rat   100 NNSFAQR-----FQGIYRCYASNNLGTAMSHEIQL----VAEGAPKWPKETVKPVEVEEGESVVL 155

  Fly   489 -CDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVD-RANYSCT-----VQTLV 546
             |:||.....:|.||......: :::|:||.:.::|.|||:.:.|.| .::|.|.     .:|::
  Rat   156 PCNPPPSAAPLRIYWMNSKILH-IKQDERVSMGQNGDLYFANVLTSDNHSDYICNAHFPGTRTII 219

  Fly   547 SDTGRNGPFFPLRVTPNSNYQALIFANTFPK-VFPE------APVAGDEIRLECMAFGYPIPSYN 604
                :..| ..|||.|.::     ..:..|: :||.      ..:.|..:.|||:|.|:|.|:..
  Rat   220 ----QKEP-IDLRVKPTNS-----MIDRKPRLLFPTNSSSHLVALQGQSLILECIAEGFPTPTIK 274

  Fly   605 WTRQG--LPLQRNAYTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINIQMRPQFTIPL 667
            |....  :|..|..|. |:.:.|.:.|....|:|||:|...|...:...:.|:.::..|.:....
  Rat   275 WLHPSDPMPTDRVIYQ-NHNKTLQLLNVGEEDDGEYTCLAENSLGSARHAYYVTVEAAPYWLQKP 338

  Fly   668 KDMIKDYNSDVTFICEAFAIPDANYTWYKNAERLDPANINRD-RYIIQDNVLTIKFLEKDKDDAM 731
            :..:..........|:....|....||..|...::  .:|:| :|.|:...|.:..:: ..|..:
  Rat   339 QSHLYGPGETARLDCQVQGRPQPEVTWRINGMSIE--KVNKDQKYRIEQGSLILSNVQ-PSDTMV 400

  Fly   732 YQCGAQNQLKTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTT-IVCDPEAAPRPKFQW-KKD 794
            .||.|:||.....::|.:.|:.:.......  :::.|....|:|. ::|....||.|..|| .::
  Rat   401 TQCEARNQHGLLLANAYIYVVQLPARILTK--DNQTYMAVEGSTAYLLCKAFGAPVPSVQWLDEE 463

  Fly   795 GQVIGSGGHRRILP--SGTLTISPTSRDDEGIYTCIASNQAGTDESHARVIV---LQEIRFIETP 854
            |..:..  ..|..|  :|||.|.....:|.|.|.|    ||..|:::..::.   ::|...|...
  Rat   464 GTTVLQ--DERFFPYANGTLGIRDLQANDTGRYFC----QAANDQNNVTILANLQVKEATQITQG 522

  Fly   855 PQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNRLTVHNTSMRDAG 919
            |:..:.|:...:...|:|:||..|..:..|:.:|..|:...|.....|.| .:|.:.:....|.|
  Rat   523 PRSTIEKKGARVTFTCQASFDPSLQASITWRGDGRDLQERGDSDKYFIED-GQLVIQSLDYSDQG 586

  Fly   920 DYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQ---ISKTKAIIEWVDGSHNGRAIRYYNI-- 979
            :|.||..:.::|:.|:..:.:.|:||....:::..   :.:::..:.|.....:...|..|:|  
  Rat   587 NYSCVASTELDEVESRAQLLVVGSPGPVPHLELSDRHLLKQSQVHLSWSPAEDHNSPIEKYDIEF 651

  Fly   980 ------------LGRTNWNRTWVNVSTHVQAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLG 1032
                        ||:...|:|                     :..:.|:|:..|.|.|||:|..|
  Rat   652 EDKEMAPEKWFSLGKVPGNQT---------------------STTLKLSPYVHYTFRVTAINKYG 695

  Fly  1033 IGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIE 1097
            .|.||..|....|.|..|...|.:|.|.|.:..::.|||.||...:.::..|.|:|.|:..|..|
  Rat   696 SGEPSPVSETVVTPEAAPEKNPVDVRGEGNETNNMVITWKPLRWMDWNAPQIQYRVQWRPLGKQE 760

  Fly  1098 -WASDEIKKQDHMGVAVVNIPLNNYYTEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPI 1161
             |      |:..:....:.:...:.:..||:||||:|:.|||||.::.:.:|.||.|||:|:...
  Rat   761 TW------KEQTVSDPFLVVSNTSTFVPYEIKVQAVNNQGKGPEPQVTIGYSGEDYPQVSPELED 819

  Fly  1162 ALAYNSTCFNVTWQPIDMSRENIRGKLIGHRLKYWKTTHQEEDSVYYL--------SRTTRNWAL 1218
            ...:||:...|.|:|:|:::  ::|.|.|:.:.||....|.:.|..::        :.||.  |:
  Rat   820 ITIFNSSTVLVRWRPVDLAQ--VKGHLRGYNVTYWWKGSQRKHSKRHVHKSHMVVPANTTS--AI 880

  Fly  1219 IVGLQPDTYYFVKVMAYNAAGEGPESERFEERTYRKAPQKP--PSSVHVYGINPSTVRVVWRYVS 1281
            :.||:|.:.|.|:|.|:|..|.||.|    |.|:......|  |.::|:...:.:::.:.|:  .
  Rat   881 LSGLRPYSSYHVEVQAFNGRGLGPAS----EWTFSTPEGVPGHPEALHLECQSDTSLLLHWQ--P 939

  Fly  1282 PSQDEEPVEGY-----------KVRIW--ESDQNMITANNTIVPIGQKLESYINNLTPGKSYNMR 1333
            |......:.||           |.:::  .||..:.|.|             :.||.|...|..:
  Rat   940 PLSHNGVLTGYLLSYHPLDGESKEQLFFNLSDPELRTHN-------------LTNLNPDLQYRFQ 991

  Fly  1334 VLAYSNGGDG 1343
            :.|.:..|.|
  Rat   992 LQATTQQGPG 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..466 CDD:472250 26/116 (22%)
Ig strand B 384..388 CDD:409356 1/3 (33%)
Ig strand C 397..409 CDD:409356 1/11 (9%)
Ig strand E 428..432 CDD:409356 1/3 (33%)
Ig strand F 443..448 CDD:409356 2/4 (50%)
Ig strand G 457..460 CDD:409356 1/2 (50%)
Ig 474..559 CDD:472250 24/95 (25%)
Ig strand B 485..489 CDD:409392 1/5 (20%)
Ig strand C 499..503 CDD:409392 2/3 (67%)
Ig strand E 523..527 CDD:409392 2/3 (67%)
Ig strand F 537..542 CDD:409392 2/9 (22%)
Ig strand G 553..556 CDD:409392 1/2 (50%)
Ig_3 584..644 CDD:464046 20/61 (33%)
Ig_3 660..738 CDD:464046 15/78 (19%)
Ig 756..844 CDD:472250 23/91 (25%)
Ig strand B 775..779 CDD:409358 1/4 (25%)
Ig strand C 788..792 CDD:409358 2/4 (50%)
Ig strand E 810..814 CDD:409358 3/3 (100%)
Ig strand F 824..829 CDD:409358 2/4 (50%)
Ig strand G 837..840 CDD:409358 0/2 (0%)
Ig <868..944 CDD:472250 20/75 (27%)
Ig strand C 881..885 CDD:409359 0/3 (0%)
Ig strand E 906..910 CDD:409359 1/3 (33%)
Ig strand F 920..925 CDD:409359 2/4 (50%)
Ig strand G 933..936 CDD:409359 1/2 (50%)
FN3 944..1043 CDD:238020 23/115 (20%)
FN3 1053..1146 CDD:238020 29/93 (31%)
fn3 1156..1244 CDD:394996 28/95 (29%)
fn3 1259..1346 CDD:394996 19/100 (19%)
L1camNP_059041.2 IgI_L1-CAM_like 35..130 CDD:409396 26/116 (22%)
Ig strand A 35..39 CDD:409396 1/3 (33%)
Ig strand A' 44..48 CDD:409396 2/3 (67%)
Ig strand B 53..60 CDD:409396 2/6 (33%)
Ig strand C 66..71 CDD:409396 1/4 (25%)
Ig strand C' 74..76 CDD:409396 0/1 (0%)
Ig strand D 83..86 CDD:409396 0/2 (0%)
Ig strand E 93..97 CDD:409396 0/3 (0%)
Ig strand F 109..117 CDD:409396 4/7 (57%)
Ig strand G 120..130 CDD:409396 3/13 (23%)
Ig 139..229 CDD:472250 26/95 (27%)
Ig strand B 153..157 CDD:409353 0/3 (0%)
Ig strand C 167..171 CDD:409353 2/3 (67%)
Ig strand E 190..194 CDD:409353 2/3 (67%)
Ig strand F 205..210 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 1/3 (33%)
Ig3_L1-CAM 247..329 CDD:409460 22/82 (27%)
Ig strand B 259..263 CDD:409460 1/3 (33%)
Ig strand C 272..276 CDD:409460 0/3 (0%)
Ig strand E 294..298 CDD:409460 1/3 (33%)
Ig strand F 308..313 CDD:409460 3/4 (75%)
Ig strand G 321..324 CDD:409460 0/2 (0%)
Ig 333..421 CDD:472250 17/90 (19%)
Ig strand B 349..353 CDD:409353 0/3 (0%)
Ig strand C 362..366 CDD:409353 1/3 (33%)
Ig strand E 386..390 CDD:409353 1/3 (33%)
Ig strand F 400..405 CDD:409353 2/4 (50%)
Ig strand G 413..416 CDD:409353 0/2 (0%)
Ig 427..513 CDD:472250 23/93 (25%)
Ig strand B 443..447 CDD:409353 0/3 (0%)
Ig strand C 456..460 CDD:409353 1/3 (33%)
Ig strand E 479..483 CDD:409353 3/3 (100%)
Ig strand F 493..498 CDD:409353 2/8 (25%)
Ig strand G 506..509 CDD:409353 0/2 (0%)
Ig 515..611 CDD:472250 24/96 (25%)
Ig strand B 534..538 CDD:409353 0/3 (0%)
Ig strand C 549..553 CDD:409353 0/3 (0%)
Cell attachment site. /evidence=ECO:0000255 553..555 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 562..564 0/1 (0%)
Ig strand E 573..577 CDD:409353 1/3 (33%)
Ig strand F 587..592 CDD:409353 2/4 (50%)
Ig strand G 600..603 CDD:409353 1/2 (50%)
FN3 611..708 CDD:238020 23/117 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 697..724 10/26 (38%)
fn3 717..798 CDD:394996 27/86 (31%)
fn3 824..906 CDD:394996 27/85 (32%)
fn3 920..1002 CDD:394996 18/97 (19%)
Bravo_FIGEY 1146..1231 CDD:464016
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1224..1255
Blue background indicates that the domain is not in the aligned region.

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